Detailed information NTG0401012

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HUK70_RS07375
• Genome accession: NZ_CP054789
• Coordinates: 1524383..1525387 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain SE5381
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1519383..1530387

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUK70_RS07345 (HUK70_07320)	fghA	1519475..1520326 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
HUK70_RS07350 (HUK70_07325)	ispF	1520397..1520870 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HUK70_RS07355 (HUK70_07330)	truD	1520867..1521934 (+)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
HUK70_RS07360 (HUK70_07335)	surE	1521922..1522671 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
HUK70_RS07365 (HUK70_07340)	-	1522704..1523339 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HUK70_RS07370 (HUK70_07345)	-	1523385..1524278 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
HUK70_RS07375 (HUK70_07350)	rpoS	1524383..1525387 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
HUK70_RS07380 (HUK70_07355)	fdxA	1525814..1526137 (-)	324	WP_003119354.1	ferredoxin FdxA	-
HUK70_RS07385 (HUK70_07360)	mutS	1526204..1528773 (-)	2570	Protein_1462	DNA mismatch repair protein MutS	-
HUK70_RS07390 (HUK70_07365)	-	1528899..1529906 (-)	1008	WP_010793357.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=401012 HUK70_RS07375 WP_003113871.1 1524383..1525387(+) (rpoS) [Pseudomonas aeruginosa strain SE5381]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=401012 HUK70_RS07375 WP_003113871.1 1524383..1525387(+) (rpoS) [Pseudomonas aeruginosa strain SE5381]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653