Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GJV56_RS11910 Genome accession   NZ_CP046080
Coordinates   2600935..2602281 (-) Length   448 a.a.
NCBI ID   WP_009084922.1    Uniprot ID   -
Organism   Elizabethkingia anophelis strain 296-96     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2595935..2607281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV56_RS11885 (GJV56_11885) - 2596217..2597209 (-) 993 WP_154492327.1 NAD-dependent epimerase/dehydratase family protein -
  GJV56_RS11890 (GJV56_11890) - 2597206..2598039 (-) 834 WP_154492329.1 SDR family oxidoreductase -
  GJV56_RS11895 (GJV56_11895) - 2598366..2599070 (-) 705 WP_078674779.1 VanW family protein -
  GJV56_RS11900 (GJV56_11900) - 2599077..2599757 (-) 681 WP_078674780.1 class I SAM-dependent methyltransferase -
  GJV56_RS11905 (GJV56_11905) - 2599760..2600914 (-) 1155 WP_154492331.1 AraC family transcriptional regulator -
  GJV56_RS11910 (GJV56_11910) radA 2600935..2602281 (-) 1347 WP_009084922.1 DNA repair protein RadA Machinery gene
  GJV56_RS11915 (GJV56_11915) - 2602498..2604117 (+) 1620 WP_009084926.1 CTP synthase -
  GJV56_RS11920 (GJV56_11920) yidC 2604126..2605907 (+) 1782 WP_061890148.1 membrane protein insertase YidC -
  GJV56_RS11925 (GJV56_11925) - 2605966..2606103 (-) 138 WP_061890149.1 hypothetical protein -
  GJV56_RS11930 (GJV56_11930) - 2606173..2606751 (-) 579 WP_061890150.1 ribonuclease HII -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49859.36 Da        Isoelectric Point: 6.7598

>NTDB_id=400963 GJV56_RS11910 WP_009084922.1 2600935..2602281(-) (radA) [Elizabethkingia anophelis strain 296-96]
MAKVKTAYYCQNCGTQYPQWHGQCKNCGEWNTLVEEVIEKSTSKNYSGEKKQHIINIIEVNAQEEPRITTPSDELNRVLG
GGIVLGSVTLIGGEPGIGKSTLLLQLALKMRKRVLYVSGEESASQIKMRADRLTDLQNPECFLFTETSVDKILHEAKKLQ
PQFMILDSIQTLHSSLIESSPGTVSQIRECSSEIIKFAKETNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNHL
FRLLRANKNRFGSTSEIGIYEMISQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRSC
TGFDAKRLNMLLAVLEKRAGFQLGSKDVFLNITGGIKTDDPALDLAVVASILSSNEDIAISEKYCFAGEIGLSGEIRPVP
QIEHRITEAEKLGYDKIYVSNLNKIPKRKFAIKIEEVSKIEEFHERLF

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=400963 GJV56_RS11910 WP_009084922.1 2600935..2602281(-) (radA) [Elizabethkingia anophelis strain 296-96]
GTGGCAAAGGTCAAAACGGCATATTACTGTCAAAATTGCGGAACTCAGTATCCGCAGTGGCACGGACAGTGCAAAAATTG
TGGAGAATGGAATACTTTGGTTGAAGAAGTTATAGAAAAATCGACTTCAAAAAATTATTCCGGAGAAAAGAAGCAACATA
TTATTAACATTATCGAGGTCAACGCCCAGGAAGAACCAAGAATTACAACCCCGAGCGATGAGCTGAACCGTGTATTGGGA
GGTGGGATCGTACTAGGTTCTGTTACCTTAATTGGTGGTGAACCGGGAATCGGGAAGTCTACCCTTTTGCTTCAGCTGGC
ACTAAAAATGCGCAAACGTGTTTTGTATGTCTCCGGAGAAGAAAGTGCTTCACAAATTAAAATGCGTGCTGATCGCCTTA
CCGATCTCCAAAATCCGGAGTGCTTCCTTTTTACAGAAACTTCTGTGGACAAGATTCTGCATGAAGCGAAAAAGCTTCAG
CCTCAGTTTATGATTCTGGATTCTATACAGACATTGCATTCCAGCCTTATAGAAAGCTCACCGGGCACAGTTTCTCAGAT
CCGGGAATGTTCTTCAGAAATTATAAAGTTTGCTAAAGAAACCAATACTCCGGTGTTTCTGGTAGGTCATATCACCAAAG
ACGGACAAATTGCAGGTCCGAAAGTTCTGGAACATATGGTGGATGTGGTTCTAAATTTCGATGGCGACAGAAATCACCTT
TTCAGGTTGCTAAGAGCTAATAAAAACCGTTTTGGCTCTACTTCCGAAATTGGTATTTATGAAATGATATCACAGGGGCT
GAAAGAAATTAAAAATCCTTCTGAAATACTGATTACCAAAAAATTTGAAGAGCTATCCGGCAATTCTGTAGCTGTAACTT
TGGAAGGAAACCGCCCAATGCTACTGGAAATTCAGGCTTTGGTAAGTACCGCAGTATATGGTACTCCACAGAGAAGCTGC
ACAGGTTTCGATGCAAAAAGGCTCAATATGCTTCTGGCAGTTCTGGAAAAACGAGCAGGCTTCCAGCTTGGATCAAAAGA
TGTATTCCTGAATATAACCGGCGGTATCAAAACTGACGATCCGGCACTGGATTTAGCAGTTGTAGCCTCTATTCTGTCTT
CCAATGAAGATATTGCTATTTCCGAGAAGTATTGCTTCGCTGGAGAAATAGGTCTTAGCGGAGAAATACGACCTGTTCCT
CAGATTGAACACCGTATCACAGAGGCCGAAAAACTGGGATATGATAAAATCTACGTTTCCAATCTGAATAAAATACCTAA
ACGGAAATTTGCGATAAAGATTGAAGAAGTCAGCAAAATCGAAGAATTCCACGAAAGACTATTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(337-421)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

48.796

100

0.498
  radA Streptococcus pneumoniae Rx1

48.796

100

0.498
  radA Streptococcus pneumoniae R6

48.796

100

0.498
  radA Streptococcus pneumoniae TIGR4

48.796

100

0.498
  radA Streptococcus mitis NCTC 12261

48.791

100

0.496
  radA Streptococcus mitis SK321

48.571

100

0.493
  radA Bacillus subtilis subsp. subtilis str. 168

48.23

100

0.487

Multiple sequence alignment