Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   HUK67_RS29340 Genome accession   NZ_CP054787
Coordinates   6187038..6187634 (-) Length   198 a.a.
NCBI ID   WP_015647905.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain HB2011305RE     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6182038..6192634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUK67_RS29320 (HUK67_29305) aroK 6183169..6183687 (-) 519 WP_003095833.1 shikimate kinase AroK -
  HUK67_RS29325 (HUK67_29310) pilQ 6183699..6185843 (-) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  HUK67_RS29330 (HUK67_29315) comL/pilP 6185897..6186421 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  HUK67_RS29335 (HUK67_29320) pilO 6186418..6187041 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  HUK67_RS29340 (HUK67_29325) pilN 6187038..6187634 (-) 597 WP_015647905.1 type 4a pilus biogenesis protein PilN Machinery gene
  HUK67_RS29345 (HUK67_29330) pilM 6187634..6188698 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  HUK67_RS29350 (HUK67_29335) - 6188883..6191351 (+) 2469 WP_003114576.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22199.52 Da        Isoelectric Point: 10.0895

>NTDB_id=400873 HUK67_RS29340 WP_015647905.1 6187038..6187634(-) (pilN) [Pseudomonas aeruginosa strain HB2011305RE]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAVENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=400873 HUK67_RS29340 WP_015647905.1 6187038..6187634(-) (pilN) [Pseudomonas aeruginosa strain HB2011305RE]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCGTCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ATAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.143

88.384

0.364

Multiple sequence alignment