Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   HUK67_RS29330 Genome accession   NZ_CP054787
Coordinates   6185897..6186421 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain HB2011305RE     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6180897..6191421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUK67_RS29315 (HUK67_29300) aroB 6182013..6183119 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  HUK67_RS29320 (HUK67_29305) aroK 6183169..6183687 (-) 519 WP_003095833.1 shikimate kinase AroK -
  HUK67_RS29325 (HUK67_29310) pilQ 6183699..6185843 (-) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  HUK67_RS29330 (HUK67_29315) comL/pilP 6185897..6186421 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  HUK67_RS29335 (HUK67_29320) pilO 6186418..6187041 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  HUK67_RS29340 (HUK67_29325) pilN 6187038..6187634 (-) 597 WP_015647905.1 type 4a pilus biogenesis protein PilN Machinery gene
  HUK67_RS29345 (HUK67_29330) pilM 6187634..6188698 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  HUK67_RS29350 (HUK67_29335) - 6188883..6191351 (+) 2469 WP_003114576.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=400871 HUK67_RS29330 WP_003095836.1 6185897..6186421(-) (comL/pilP) [Pseudomonas aeruginosa strain HB2011305RE]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=400871 HUK67_RS29330 WP_003095836.1 6185897..6186421(-) (comL/pilP) [Pseudomonas aeruginosa strain HB2011305RE]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
TCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362

Multiple sequence alignment