Detailed information NTG0400861

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GGC04_RS13955
• Genome accession: NZ_CP046065
• Coordinates: 3034243..3035226 (-)
• Length: 327 a.a.
• NCBI ID: WP_006958149.1
• Uniprot ID: A0A097AVA5
• Organism: Vibrio sp. THAF191d
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3029243..3040226

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GGC04_RS13930 (GGC04_14075)	rimM	3029352..3029900 (-)	549	WP_006958145.1	ribosome maturation factor RimM	-
GGC04_RS13935 (GGC04_14080)	rpsP	3029930..3030178 (-)	249	WP_005438039.1	30S ribosomal protein S16	-
GGC04_RS13940 (GGC04_14085)	ffh	3030387..3031778 (-)	1392	WP_006958146.1	signal recognition particle protein	-
GGC04_RS13945 (GGC04_14090)	-	3031984..3032778 (+)	795	WP_038164050.1	inner membrane protein YpjD	-
GGC04_RS13950 (GGC04_14095)	-	3032901..3034175 (+)	1275	WP_006958148.1	HlyC/CorC family transporter	-
GGC04_RS13955 (GGC04_14100)	rpoS	3034243..3035226 (-)	984	WP_006958149.1	RNA polymerase sigma factor RpoS	Regulator
GGC04_RS13960 (GGC04_14105)	nlpD	3035293..3036204 (-)	912	WP_006958150.1	murein hydrolase activator NlpD	-
GGC04_RS13965 (GGC04_14110)	-	3036207..3036833 (-)	627	WP_006958151.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GGC04_RS13970 (GGC04_14115)	surE	3036836..3037579 (-)	744	WP_172845461.1	5'/3'-nucleotidase SurE	-
GGC04_RS13975 (GGC04_14120)	truD	3037591..3038637 (-)	1047	WP_006958153.1	tRNA pseudouridine(13) synthase TruD	-
GGC04_RS13980 (GGC04_14125)	ispF	3038684..3039163 (-)	480	WP_019277514.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GGC04_RS13985 (GGC04_14130)	ispD	3039167..3039871 (-)	705	WP_154351809.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GGC04_RS13990 (GGC04_14135)	ftsB	3039874..3040152 (-)	279	WP_006958167.1	cell division protein FtsB	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37396.39 Da
• Isoelectric Point: 4.7232

>NTDB_id=400861 GGC04_RS13955 WP_006958149.1 3034243..3035226(-) (rpoS) [Vibrio sp. THAF191d]
MSISNTATKVEEFELEPTMESIQANGLTTANRTQAEDAKEEFDASTKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIATQLDKPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDVNNSDP
EVSTQDDDIKSSLIHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILIKQGLNMES
LFSMNEE

Nucleotide

• Length: 984 bp

>NTDB_id=400861 GGC04_RS13955 WP_006958149.1 3034243..3035226(-) (rpoS) [Vibrio sp. THAF191d]
ATGAGTATCAGCAATACAGCAACGAAAGTCGAAGAGTTCGAGCTTGAACCAACAATGGAATCGATTCAGGCAAACGGGCT
TACTACCGCCAACCGCACCCAAGCAGAGGACGCCAAAGAGGAGTTTGACGCTTCCACAAAAAGCTTGGATGCCACTCAAC
TTTACTTGGGAGAAATTGGTTTCTCTCCACTACTCACCGCAGAAGAAGAAGTTTTGTACGCTCGCCGTGCCCTAAGAGGT
GATGAAGCTGCGCGTAAACGAATGATTGAAAGTAATCTTCGCTTAGTGGTGAAAATTTCCCGTCGATACAGCAACCGTGG
GCTTGCTCTGCTTGATCTGATTGAAGAAGGCAACTTAGGCTTGATTCGCGCGGTTGAAAAGTTTGACCCAGAGAGAGGAT
TCCGGTTCTCGACCTATGCTACATGGTGGATCCGTCAAACGATTGAACGTGCTTTGATGAATCAAACTCGCACCATACGT
TTGCCTATTCATGTGGTCAAAGAACTGAACATCTATCTGCGTACTGCTCGTGAGTTATCACAGAAGCTGGACCATGAACC
AACAGCAGAAGAGATTGCTACACAACTCGACAAGCCAGTCGACGATGTCAGCAAGATGCTACGCCTCAACGAACGAATTA
GTTCTGTAGACACCCCTATCGGTGGTGATGGTGAAAAAGCACTGCTAGATATTATTCCTGATGTGAACAACTCTGATCCT
GAAGTGTCCACACAAGACGATGATATCAAATCTTCATTGATCCATTGGTTGGATGAACTGAATCCTAAGCAGAAAGAAGT
CTTAGCACGTCGTTTTGGATTATTGGGCTACGAGCCGTCAACACTGGAAGAAGTAGGACGTGAAATTAACCTAACTCGTG
AACGTGTTCGTCAGATTCAGGTTGAAGGCCTACGTCGTTTAAGAGAGATCCTGATCAAACAAGGTCTGAACATGGAAAGC
CTGTTCAGCATGAACGAAGAATAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

3D structure

• AlphaFold DB: A0A097AVA5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.988	100	0.85