Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GGC04_RS02110 Genome accession   NZ_CP046065
Coordinates   454105..454623 (+) Length   172 a.a.
NCBI ID   WP_006957088.1    Uniprot ID   A0A097QN45
Organism   Vibrio sp. THAF191d     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 449105..459623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GGC04_RS02100 (GGC04_02115) gshA 451906..453474 (+) 1569 WP_006957083.1 glutamate--cysteine ligase -
  GGC04_RS02105 (GGC04_02120) - 453514..454080 (+) 567 WP_050778588.1 hypothetical protein -
  GGC04_RS02110 (GGC04_02125) luxS 454105..454623 (+) 519 WP_006957088.1 S-ribosylhomocysteine lyase Regulator
  GGC04_RS02115 (GGC04_02130) - 454669..455145 (-) 477 WP_006957090.1 RDD family protein -
  GGC04_RS02125 (GGC04_02140) - 455589..456833 (+) 1245 WP_152471952.1 tyrosine-type recombinase/integrase -
  GGC04_RS02130 (GGC04_02145) - 457279..458157 (-) 879 WP_152471953.1 winged helix-turn-helix domain-containing protein -
  GGC04_RS02135 (GGC04_02150) - 458546..459190 (+) 645 WP_152471954.1 inovirus Gp2 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19051.83 Da        Isoelectric Point: 4.7134

>NTDB_id=400845 GGC04_RS02110 WP_006957088.1 454105..454623(+) (luxS) [Vibrio sp. THAF191d]
MPLLDSFTVDHTRMNAPAVRVAKTMTTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRSHLNGDSVEIIDISP
MGCRTGFYMSLIGTPTEEQVAQSWLSSMQDVLKVESQNKIPELNEYQCGTAAMHSLEEAKQIAQAIIDAGIKVNLNDELA
LPESMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=400845 GGC04_RS02110 WP_006957088.1 454105..454623(+) (luxS) [Vibrio sp. THAF191d]
ATGCCATTATTAGATAGCTTTACTGTGGATCACACTCGTATGAATGCGCCAGCGGTGAGAGTGGCTAAGACAATGACCAC
GCCGAAAGGTGATACCATTACTGTGTTTGACCTGCGTTTTACTGCACCAAACAAAGACATTCTTTCTGAGAAAGGCATTC
ACACACTGGAACACTTATACGCAGGTTTCATGCGCAGTCACTTAAACGGTGATAGCGTAGAAATTATCGATATTTCGCCA
ATGGGCTGCCGTACTGGCTTTTACATGAGCCTGATTGGCACACCAACAGAAGAGCAGGTAGCTCAGTCTTGGTTGTCATC
GATGCAAGATGTGCTAAAAGTTGAAAGCCAAAACAAGATCCCTGAATTAAACGAATATCAATGTGGCACTGCTGCGATGC
ACTCTCTTGAGGAAGCTAAACAGATTGCTCAAGCTATAATTGACGCAGGCATCAAAGTTAACCTCAATGACGAGTTAGCT
TTACCTGAGTCAATGCTTAAAGAGCTGAAAGTCGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A097QN45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.719

99.419

0.872

Multiple sequence alignment