Detailed information NTG0400841

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: GGC04_RS00975
• Genome accession: NZ_CP046065
• Coordinates: 219435..220442 (+)
• Length: 335 a.a.
• NCBI ID: WP_006963339.1
• Uniprot ID: A0A097QNP8
• Organism: Vibrio sp. THAF191d
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 214435..225442

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GGC04_RS00955 (GGC04_00955)	metJ	214539..214859 (+)	321	WP_006963343.1	met regulon transcriptional regulator MetJ	-
GGC04_RS00960 (GGC04_00960)	-	214947..216224 (-)	1278	WP_006963342.1	malic enzyme-like NAD(P)-binding protein	-
GGC04_RS00965 (GGC04_00965)	rpmE	216476..216694 (-)	219	WP_006963341.1	50S ribosomal protein L31	-
GGC04_RS00970 (GGC04_00970)	priA	216985..219186 (+)	2202	WP_152471942.1	primosomal protein N'	-
GGC04_RS00975 (GGC04_00975)	cytR	219435..220442 (+)	1008	WP_006963339.1	DNA-binding transcriptional regulator CytR	Regulator
GGC04_RS00980 (GGC04_00980)	-	220557..221105 (+)	549	WP_029236296.1	SPOR domain-containing protein	-
GGC04_RS00985 (GGC04_00985)	hslV	221267..221812 (+)	546	WP_006963336.1	ATP-dependent protease subunit HslV	-
GGC04_RS00990 (GGC04_00990)	hslU	221850..223184 (+)	1335	WP_021457296.1	HslU--HslV peptidase ATPase subunit	-
GGC04_RS00995 (GGC04_00995)	-	223349..224032 (+)	684	WP_152471943.1	nitroreductase family protein	-
GGC04_RS01000 (GGC04_01000)	frdD	224091..224468 (-)	378	WP_152471944.1	fumarate reductase subunit FrdD	-
GGC04_RS01005 (GGC04_01005)	frdC	224481..224864 (-)	384	WP_152471945.1	fumarate reductase subunit FrdC	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36965.58 Da
• Isoelectric Point: 6.0455

>NTDB_id=400841 GGC04_RS00975 WP_006963339.1 219435..220442(+) (cytR) [Vibrio sp. THAF191d]
MATMKDVAQLAGVSTATVSRALMNPEKVSSATRKRVEDAVLEAGYSPNSLARNLRRNESKTIIAIIPDICDPYYTEIIRG
IEDAAMEHGYIVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQMGHKRIAQISGPSSAVLCQFRYQGYQQALRRAGISMNPNYCIYGDFSFEDGAKAVRQLLALPEPPTA
IFCHNDAMAIGAIQEAKKLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TQLVVRESAAPPRVI

Nucleotide

• Length: 1008 bp

>NTDB_id=400841 GGC04_RS00975 WP_006963339.1 219435..220442(+) (cytR) [Vibrio sp. THAF191d]
ATGGCGACAATGAAGGATGTTGCTCAGCTAGCAGGCGTTTCAACTGCAACAGTATCGCGTGCTCTAATGAACCCGGAAAA
AGTATCTTCAGCTACAAGGAAGCGAGTAGAAGATGCAGTATTAGAAGCCGGATATTCACCAAATTCTCTGGCGCGCAACC
TGCGCCGAAATGAGTCCAAAACCATAATTGCAATCATCCCGGATATTTGTGATCCCTACTACACAGAGATCATCCGTGGA
ATTGAAGACGCTGCGATGGAACATGGATACATCGTGCTGCTGGGAGACAGTGGTCAGCAGAAAAAGCGTGAGAGTTCTTT
TGTCAATCTTGTCTTTACTAAGCAGGCCGATGGAATGTTGCTGCTTGGTACTGATCTGCCGTTTGACGTCAGCAAACCTG
AGCAGAAAAACCTGCCGCCTATGGTGATGGCATGTGAGTTTGCACCTGAACTGGAGCTGCCAACGGTGCACATTGATAAC
CTGACATCGGCATTTGAAGCCGTGAACTATCTTACGCAGATGGGTCACAAGCGCATTGCTCAGATTTCGGGCCCTAGTTC
TGCGGTACTATGCCAGTTCCGCTACCAAGGTTACCAGCAAGCGTTACGCCGAGCCGGCATTAGTATGAATCCGAATTACT
GTATCTACGGTGACTTCTCGTTTGAAGATGGTGCGAAAGCCGTCAGACAATTGTTGGCTTTACCTGAGCCGCCAACCGCG
ATTTTCTGTCACAACGATGCGATGGCCATCGGGGCAATTCAAGAAGCGAAGAAGCTGGGCTTGCGCGTCCCGCAAGACCT
GTCTGTCGTTGGCTTTGATGATATTCAGTTTGCTCAGTACTGCGATCCACCACTGACGACCATTTCTCAGCCACGTTACG
AGATTGGCCGACAGGCAATGTTGATGATGCTTGAGTTGTTGCGCGGCCATGATGTTCGTGCCGGTTCTCGATTGCTGGAA
ACTCAGCTGGTTGTCAGGGAAAGCGCTGCTCCACCGCGAGTCATCTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A097QNP8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	92.771	99.104	0.919
cytR	Vibrio parahaemolyticus RIMD 2210633	90.09	99.403	0.896