Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimV   Type   Machinery gene
Locus tag   GJV01_RS10315 Genome accession   NZ_CP046061
Coordinates   2181317..2184079 (+) Length   920 a.a.
NCBI ID   WP_031692597.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 1811-13R031     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2176317..2189079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV01_RS10295 - 2176952..2177713 (+) 762 WP_003091396.1 class I SAM-dependent methyltransferase -
  GJV01_RS10300 leuB 2177772..2178854 (+) 1083 WP_031692596.1 3-isopropylmalate dehydrogenase -
  GJV01_RS10305 asd 2178924..2180036 (+) 1113 WP_003111187.1 aspartate-semialdehyde dehydrogenase -
  GJV01_RS10310 - 2180138..2181148 (+) 1011 WP_023108535.1 aspartate-semialdehyde dehydrogenase -
  GJV01_RS10315 fimV 2181317..2184079 (+) 2763 WP_031692597.1 motility hub landmark protein FimV Machinery gene
  GJV01_RS10320 truA 2184101..2184958 (+) 858 WP_003091390.1 tRNA pseudouridine(38-40) synthase TruA -
  GJV01_RS10325 - 2185048..2185683 (+) 636 WP_003091389.1 phosphoribosylanthranilate isomerase -
  GJV01_RS10330 accD 2185952..2186824 (+) 873 WP_003104199.1 acetyl-CoA carboxylase, carboxyltransferase subunit beta -
  GJV01_RS10335 folC 2186821..2188110 (+) 1290 WP_015502644.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  GJV01_RS10340 - 2188114..2188755 (+) 642 WP_031692599.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 920 a.a.        Molecular weight: 96936.12 Da        Isoelectric Point: 3.9423

>NTDB_id=400813 GJV01_RS10315 WP_031692597.1 2181317..2184079(+) (fimV) [Pseudomonas aeruginosa strain 1811-13R031]
MVRLRTLVRAIAAASVLTSGMAHGLGLGEITLKSALNQPLDAEIELLEVRDLGSGEVIPSLASPEEFSKAGVDRLYYLTD
LKFTPVVKPNGKSVIRVTSSKPVQEPYLNFLVQVLWPNGRLLREYTVLLDPPLYSPQAAASVPQAPVSAPRATGAPRAPQ
GPAPVRTTAPAGSDTYRTVSNDTLWEIAQRNRTDRVSVPQAMLAFQELNPGAFVDGNINRLKSGQVLRIPTEQQMLERSP
REALSQVQAQNQSWRGSRNPAAGTAGARQLDATQRNAAGSAPSKVDATDNLRLVSGEGKASKGADKGGKGDSKAIADTLA
VTKESLDSTRRENEELQSRMQDLQSQLDKLQKLIQLKDAQLAKLQGQLGAEGQGAAQPNAALPDASQPNAAAQAPAQPGT
PAAAAPTPAPAGEAPAAPAQPPVAPPPAPAAEKPPAPAVPVQAAEQPAPSFLDELLANPLWLAVIGGSALLALLVLLMIL
SRRNAQKEKEEAQAFAADAGEEQEDALDLGKDGFDDLTLDEPEPQVAAAAPQVEKTTAQTSDALGEADIYIAYGRFNQAA
ELLQNAIYDEPQRTDLRLKLMEVYAEMGDREGFARQENELREIGGAQPQVEQLKSRYPAMVAVAAVAGLAGAKLAQDELD
SFSLDDLSLDDSGHAAKPDAAGQDLDDAFDLSLDDLGGGDLGSDDVQADLKSDSGALDDLTLDSDLDLAASTAADKPVDD
LDFGLDFAELAETPSQPKHDDLGDFSLDLDAPEDKLSDDDFLLSLNDEVPAAAPADNEFTLDTEAAEEPALSLPDDFDLS
LADEPTEPAAPEKGEDSFAAQLDEVSAQLDELASNLDEPKSAAPSFSAEDAAVASALDGDADDDFDFLSGADEAATKLDL
ARAYIDMGDSEGARDILDEVLAEGNDSQQAEARELLERLA

Nucleotide


Download         Length: 2763 bp        

>NTDB_id=400813 GJV01_RS10315 WP_031692597.1 2181317..2184079(+) (fimV) [Pseudomonas aeruginosa strain 1811-13R031]
ATGGTTCGGCTTCGTACACTGGTTCGGGCAATCGCGGCGGCCTCGGTCCTGACTTCCGGCATGGCGCATGGATTGGGACT
GGGGGAAATCACCCTGAAGTCGGCGTTGAACCAACCGTTGGATGCCGAGATCGAGCTGCTCGAAGTTCGTGACCTGGGTT
CGGGCGAGGTGATCCCGAGCCTGGCGTCGCCGGAAGAGTTCAGCAAGGCGGGCGTCGATCGCCTGTACTACCTCACCGAC
CTGAAGTTCACGCCGGTGGTGAAGCCCAACGGCAAGAGCGTCATTCGCGTGACCTCGTCGAAGCCGGTGCAGGAGCCCTA
CCTGAACTTCCTGGTCCAGGTGCTCTGGCCGAACGGCCGCCTGCTGCGCGAGTACACCGTCCTGCTGGACCCGCCGCTGT
ACTCCCCGCAGGCCGCGGCAAGCGTTCCGCAAGCGCCGGTCAGCGCGCCGCGCGCGACCGGCGCCCCGCGAGCCCCGCAG
GGGCCGGCTCCGGTGCGTACCACTGCGCCGGCAGGCAGCGACACCTATCGCACCGTTTCCAACGATACGCTCTGGGAGAT
CGCCCAGCGCAACCGTACCGATCGCGTTTCCGTACCCCAGGCGATGCTCGCGTTCCAGGAACTGAATCCGGGCGCCTTCG
TCGATGGCAACATCAACCGGCTGAAGAGCGGCCAGGTCCTGCGCATTCCCACCGAACAGCAGATGCTGGAGCGCTCGCCG
CGCGAGGCGCTGTCCCAGGTGCAGGCGCAGAACCAGAGCTGGCGCGGCAGCCGCAATCCGGCCGCGGGCACCGCTGGCGC
CAGGCAGTTGGATGCGACCCAGCGCAATGCCGCCGGGTCGGCGCCATCCAAGGTCGACGCCACGGACAACCTGCGCCTGG
TGTCTGGCGAGGGCAAGGCCAGCAAGGGTGCCGACAAGGGCGGGAAGGGCGACAGCAAGGCGATCGCCGATACCCTGGCG
GTGACCAAGGAAAGCCTCGATAGCACTCGCCGCGAGAACGAAGAACTGCAGAGCCGCATGCAGGATCTGCAGAGCCAGTT
GGACAAGCTGCAGAAGTTGATCCAGTTGAAGGACGCCCAGTTGGCCAAGCTGCAAGGGCAGTTGGGCGCCGAAGGCCAGG
GCGCAGCCCAGCCGAACGCAGCCCTGCCGGATGCGTCCCAGCCCAATGCAGCCGCGCAGGCGCCGGCTCAGCCCGGGACT
CCCGCTGCGGCAGCGCCGACTCCTGCTCCGGCCGGAGAAGCACCCGCCGCTCCGGCGCAGCCTCCGGTGGCGCCGCCGCC
CGCGCCAGCTGCCGAGAAGCCTCCGGCACCTGCCGTTCCGGTACAGGCGGCAGAACAGCCGGCACCGAGCTTCCTCGACG
AACTGCTGGCCAACCCGCTGTGGTTGGCGGTGATCGGCGGTAGCGCACTGCTGGCGTTGCTGGTGCTGCTGATGATCCTG
TCGCGGCGCAATGCGCAGAAAGAGAAGGAAGAAGCCCAGGCTTTCGCCGCGGATGCCGGCGAGGAACAGGAGGATGCGCT
GGACCTGGGAAAGGACGGCTTCGACGACCTGACCCTCGACGAGCCTGAACCGCAGGTCGCAGCCGCTGCGCCGCAGGTCG
AGAAGACCACTGCGCAGACTTCCGATGCGCTGGGCGAGGCTGACATCTATATCGCCTACGGGCGTTTCAACCAGGCCGCC
GAACTGTTGCAGAACGCCATCTACGACGAGCCGCAGCGCACCGACCTGCGCCTCAAGCTGATGGAAGTCTATGCCGAGAT
GGGCGATCGCGAAGGTTTCGCTCGCCAGGAAAACGAGCTGCGCGAAATCGGCGGCGCACAGCCGCAGGTCGAGCAGCTCA
AGTCGCGCTACCCGGCAATGGTCGCGGTCGCCGCGGTTGCCGGCCTGGCCGGCGCCAAGCTGGCGCAGGACGAGCTGGAT
AGCTTCAGCCTCGACGACCTGTCGCTCGACGACAGCGGTCACGCGGCCAAGCCGGATGCGGCAGGACAGGATCTCGACGA
CGCCTTCGACCTGAGCCTGGACGACCTGGGCGGCGGCGATCTTGGCAGCGACGACGTGCAGGCCGATCTCAAGTCCGACA
GCGGGGCGCTGGACGACCTGACCCTGGACAGCGATCTGGACCTGGCGGCCTCGACCGCGGCGGACAAGCCTGTCGACGAT
CTCGACTTCGGCCTGGATTTCGCGGAGTTGGCAGAGACTCCGAGCCAACCCAAGCATGACGACCTGGGCGATTTCTCCCT
GGATCTCGATGCGCCGGAAGACAAGCTTTCGGACGACGACTTCCTGCTTTCGCTGAACGACGAGGTGCCCGCCGCGGCGC
CCGCCGACAACGAATTCACCCTCGATACCGAGGCTGCCGAAGAGCCGGCGTTGTCCCTGCCGGACGACTTCGACCTGTCG
CTGGCCGACGAGCCGACGGAGCCGGCCGCTCCGGAGAAGGGCGAGGACAGTTTCGCCGCCCAGTTGGACGAGGTGAGTGC
GCAGTTGGACGAGTTGGCCAGCAACCTTGACGAGCCGAAGAGCGCGGCGCCGAGTTTCTCCGCCGAGGATGCAGCGGTCG
CCTCCGCCCTGGACGGAGACGCCGACGATGACTTCGACTTCCTCTCCGGTGCCGACGAAGCGGCGACCAAGCTGGATCTG
GCTCGCGCCTACATCGACATGGGCGATAGCGAAGGCGCGCGCGATATCCTCGACGAAGTCCTGGCCGAAGGTAACGACAG
CCAGCAGGCGGAAGCCCGCGAGTTGCTGGAGCGCCTGGCCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimV Pseudomonas aeruginosa PAK

98.16

100

0.986

Multiple sequence alignment