Detailed information NTG0400809

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HUK67_RS07325
• Genome accession: NZ_CP054787
• Coordinates: 1542221..1543225 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain HB2011305RE
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1537221..1548225

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUK67_RS07295 (HUK67_07295)	fghA	1537313..1538164 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
HUK67_RS07300 (HUK67_07300)	ispF	1538235..1538708 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HUK67_RS07305 (HUK67_07305)	truD	1538705..1539772 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
HUK67_RS07310 (HUK67_07310)	surE	1539760..1540509 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
HUK67_RS07315 (HUK67_07315)	-	1540542..1541177 (+)	636	WP_015649078.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HUK67_RS07320 (HUK67_07320)	-	1541223..1542116 (+)	894	WP_198580808.1	peptidoglycan DD-metalloendopeptidase family protein	-
HUK67_RS07325 (HUK67_07325)	rpoS	1542221..1543225 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
HUK67_RS07330 (HUK67_07330)	fdxA	1543652..1543975 (-)	324	WP_003092272.1	ferredoxin FdxA	-
HUK67_RS07335 (HUK67_07335)	mutS	1544042..1546621 (-)	2580	WP_079386749.1	DNA mismatch repair protein MutS	-
HUK67_RS07340 (HUK67_07340)	-	1546681..1547655 (-)	975	WP_077563222.1	tyrosine-type recombinase/integrase	-
HUK67_RS07345 (HUK67_07345)	-	1547665..1547874 (-)	210	WP_071538228.1	DUF4224 domain-containing protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=400809 HUK67_RS07325 WP_003113871.1 1542221..1543225(+) (rpoS) [Pseudomonas aeruginosa strain HB2011305RE]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=400809 HUK67_RS07325 WP_003113871.1 1542221..1543225(+) (rpoS) [Pseudomonas aeruginosa strain HB2011305RE]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653