Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   GJV02_RS29205 Genome accession   NZ_CP046060
Coordinates   6099352..6099909 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 1811-18R001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6094352..6104909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV02_RS29185 pilR 6095628..6096965 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  GJV02_RS29190 thiO 6097011..6098105 (-) 1095 WP_010895678.1 glycine oxidase ThiO -
  GJV02_RS29195 - 6098240..6098749 (+) 510 WP_003112829.1 GspH/FimT family pseudopilin -
  GJV02_RS29200 - 6098855..6099361 (+) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  GJV02_RS29205 pilV 6099352..6099909 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  GJV02_RS29210 pilW 6099906..6100730 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  GJV02_RS29215 pilX 6100727..6101314 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  GJV02_RS29220 pilY1 6101326..6104817 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=400795 GJV02_RS29205 WP_003119423.1 6099352..6099909(+) (pilV) [Pseudomonas aeruginosa strain 1811-18R001]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=400795 GJV02_RS29205 WP_003119423.1 6099352..6099909(+) (pilV) [Pseudomonas aeruginosa strain 1811-18R001]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995

Multiple sequence alignment