Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   GJV02_RS10985 Genome accession   NZ_CP046060
Coordinates   2336587..2337222 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain 1811-18R001     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2331587..2342222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV02_RS10970 - 2332305..2333549 (+) 1245 WP_003105198.1 lipoprotein-releasing ABC transporter permease subunit -
  GJV02_RS10975 - 2333625..2334158 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  GJV02_RS10980 comA 2334289..2336514 (+) 2226 WP_031692631.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GJV02_RS10985 exbB 2336587..2337222 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  GJV02_RS10990 - 2337219..2337659 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  GJV02_RS10995 lpxK 2337659..2338657 (+) 999 WP_031692632.1 tetraacyldisaccharide 4'-kinase -
  GJV02_RS11000 - 2338695..2338880 (+) 186 WP_003091157.1 Trm112 family protein -
  GJV02_RS11005 kdsB 2338880..2339644 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GJV02_RS11010 - 2339644..2340108 (+) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  GJV02_RS11015 murB 2340105..2341124 (+) 1020 WP_031692634.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=400781 GJV02_RS10985 WP_003091163.1 2336587..2337222(+) (exbB) [Pseudomonas aeruginosa strain 1811-18R001]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=400781 GJV02_RS10985 WP_003091163.1 2336587..2337222(+) (exbB) [Pseudomonas aeruginosa strain 1811-18R001]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGCCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGCACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment