Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   D3800_RS22640 Genome accession   NZ_CP046058
Coordinates   4777924..4779552 (+) Length   542 a.a.
NCBI ID   WP_238142290.1    Uniprot ID   -
Organism   Microcystis aeruginosa NIES-298     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4772924..4784552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3800_RS22635 (D3800_22620) - 4775142..4777568 (-) 2427 WP_103111191.1 dynamin-like GTPase family protein -
  D3800_RS22640 (D3800_22625) comA 4777924..4779552 (+) 1629 WP_238142290.1 DUF655 domain-containing protein Machinery gene
  D3800_RS22645 (D3800_22630) - 4779813..4780124 (-) 312 WP_002734125.1 MgPME-cyclase complex family protein -
  D3800_RS22650 (D3800_22635) - 4780192..4780914 (-) 723 WP_202861568.1 pyridoxine 5'-phosphate synthase -
  D3800_RS22655 (D3800_22640) - 4780974..4781318 (-) 345 WP_002733791.1 YbaB/EbfC family nucleoid-associated protein -
  D3800_RS22660 (D3800_22645) - 4781582..4782778 (+) 1197 WP_238142291.1 DUF4377 domain-containing protein -
  D3800_RS22665 (D3800_22650) - 4783025..4783846 (-) 822 WP_103111195.1 hypothetical protein -
  D3800_RS25040 - 4784048..4784179 (-) 132 WP_258012289.1 hypothetical protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 60905.38 Da        Isoelectric Point: 9.3548

>NTDB_id=400769 D3800_RS22640 WP_238142290.1 4777924..4779552(+) (comA) [Microcystis aeruginosa NIES-298]
MAIDKLRLKKIQPMRQLGFLLGTVFLLGGCHSLNAIQNRPQPLPQDQYIQVYFNYNQAQGSNYTDPYRQINRPGDNLEQI
IIDNINSAKSSIDLAVQELRLPAIAQALVARQQQGIKVRVILENIYNQPIHSLAKNQEQLSDQEQERYQNLFDLVDLNRD
GKLSAEEIAQRDAITILKKAGIPLIDDRADRSKGSSLMHHKFMVIDHHTTLISSANYTLSDIHGDFSNPKTVGNANHLLV
ITNPPLARVFQKEFNLIWGREDRPRFGLDKPQRNPQTITIGNSSLTVKFSPDSTAYPWAITSNGLIGETLNKAKKSVNLA
LFVFTEQPLANILDQRHQKGIEIKALIDPSFAFRYYSEGLDLLGVALSNKCRYELDNQPWQNPINTLGVPALAAGDKLHH
KFGLIDDKIVITGSHNWSAAANHQNDEALVIINNPTVAAHFDREFQYLYRTAKLGLPETIKNRIERDRKNCPQSVTVKSD
RLINLNTATKEELDTLPGISGKLAEKIIAARQEKPFTSLEDLDRVSGIGKGKINKLQGKVSW

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=400769 D3800_RS22640 WP_238142290.1 4777924..4779552(+) (comA) [Microcystis aeruginosa NIES-298]
ATGGCAATAGATAAATTGAGATTAAAAAAAATTCAGCCGATGAGACAGTTAGGATTTTTGTTAGGAACAGTTTTTCTTTT
GGGTGGCTGTCATTCTCTCAATGCTATCCAAAATCGTCCCCAACCCTTGCCCCAAGATCAATATATTCAAGTCTATTTTA
ATTATAATCAGGCCCAGGGTTCAAATTATACCGATCCCTATCGCCAAATTAATCGTCCAGGGGATAATTTAGAACAGATT
ATTATTGATAATATTAACTCGGCAAAAAGTTCGATCGATCTAGCGGTGCAAGAGTTACGTTTACCCGCCATCGCTCAAGC
TTTAGTTGCTCGTCAGCAGCAGGGAATTAAAGTTAGGGTTATCCTCGAAAATATTTACAATCAACCTATTCATAGTTTAG
CCAAAAACCAAGAACAATTAAGCGATCAAGAACAGGAACGTTATCAAAACCTTTTTGATTTAGTTGATCTAAATCGAGAT
GGTAAATTAAGTGCGGAGGAAATCGCCCAAAGAGATGCAATTACTATCCTCAAAAAAGCTGGTATTCCCCTAATTGATGA
TAGGGCAGATCGCTCAAAAGGTAGCAGTTTAATGCACCATAAATTCATGGTTATTGATCATCACACTACTTTAATCAGTT
CAGCTAACTATACCTTAAGTGATATTCATGGAGACTTTTCTAATCCCAAAACTGTCGGGAATGCCAATCACTTATTAGTA
ATTACTAATCCCCCACTAGCTAGAGTTTTTCAAAAAGAATTTAATCTGATATGGGGAAGGGAAGATCGGCCTAGATTTGG
GTTAGATAAACCCCAGAGAAACCCGCAAACAATTACTATCGGTAATAGTAGTCTGACGGTAAAATTTTCCCCCGATTCTA
CCGCTTATCCTTGGGCAATTACTAGCAATGGTCTGATCGGTGAAACTTTAAATAAAGCTAAAAAATCCGTGAATTTAGCC
CTGTTTGTCTTTACAGAACAGCCTTTAGCTAATATTCTCGATCAACGACATCAAAAAGGGATAGAAATTAAAGCTTTAAT
TGATCCTAGTTTTGCCTTCCGATACTATAGCGAAGGATTAGATTTATTAGGAGTTGCTCTCAGTAATAAATGTCGTTATG
AACTAGATAATCAGCCTTGGCAAAACCCAATTAATACCCTAGGAGTTCCCGCTCTAGCGGCGGGAGATAAGTTACACCAT
AAATTCGGTTTAATCGATGATAAAATTGTGATCACTGGTTCTCATAATTGGTCAGCAGCTGCTAACCACCAAAACGATGA
AGCTTTAGTTATTATCAATAATCCCACCGTTGCCGCTCATTTCGATCGAGAATTTCAATATCTTTACCGTACCGCTAAAT
TAGGACTGCCGGAAACTATTAAAAATCGGATCGAACGGGATAGAAAAAACTGCCCCCAATCCGTAACAGTTAAAAGCGAT
CGCTTAATTAATTTAAACACCGCCACAAAAGAGGAACTAGATACTTTACCCGGTATCAGTGGCAAATTAGCCGAAAAAAT
TATCGCAGCCCGGCAAGAAAAACCCTTTACTTCCCTAGAAGATTTGGATCGAGTATCGGGAATCGGTAAGGGAAAAATTA
ACAAGCTGCAAGGCAAAGTTAGCTGGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(481-540)

PLD-like domain (PLDc_2)

(308-448)

PLD-like domain (PLDc_2)

(81-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

51.97

98.339

0.511

Multiple sequence alignment