Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   D3800_RS17110 Genome accession   NZ_CP046058
Coordinates   3644230..3645756 (-) Length   508 a.a.
NCBI ID   WP_103111889.1    Uniprot ID   -
Organism   Microcystis aeruginosa NIES-298     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 3642151..3649221 3644230..3645756 within 0


Gene organization within MGE regions


Location: 3642151..3649221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3800_RS17085 (D3800_17080) - 3642151..3642609 (-) 459 WP_103111886.1 DUF29 domain-containing protein -
  D3800_RS17090 (D3800_17085) - 3642621..3643076 (-) 456 WP_103111887.1 DUF29 domain-containing protein -
  D3800_RS17095 (D3800_17090) - 3643088..3643543 (-) 456 WP_103111888.1 DUF29 domain-containing protein -
  D3800_RS17100 (D3800_17095) - 3643555..3644010 (-) 456 WP_016515036.1 DUF29 domain-containing protein -
  D3800_RS17105 (D3800_17100) petL 3644083..3644184 (-) 102 WP_002791324.1 cytochrome b6-f complex subunit PetL -
  D3800_RS17110 (D3800_17105) radA 3644230..3645756 (-) 1527 WP_103111889.1 DNA repair protein RadA Machinery gene
  D3800_RS17115 (D3800_17110) - 3645990..3646718 (+) 729 WP_002734727.1 response regulator transcription factor -
  D3800_RS17120 (D3800_17115) - 3646728..3647369 (+) 642 WP_002731649.1 cofactor assembly of complex C subunit B -
  D3800_RS24635 - 3647890..3648117 (+) 228 WP_238142355.1 hypothetical protein -
  D3800_RS17135 (D3800_17130) folE 3648565..3649221 (+) 657 WP_002791327.1 GTP cyclohydrolase I FolE -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54900.42 Da        Isoelectric Point: 4.9662

>NTDB_id=400766 D3800_RS17110 WP_103111889.1 3644230..3645756(-) (radA) [Microcystis aeruginosa NIES-298]
MAKSRTIYICSACGAESPQWLGKCPSCDTYGTLEEQVMAGGNNPAGNRPGWQNSRPNNGKGQRNPQPRISVRFSEITQYE
QERFPSGYGEFDRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVTNQLAQRLPRILYVSAEESGQQIKLRAARLGVGVVAVE
SENNGNGKEKKASESTAELDNHLYVLPETDLEEILRELESLRPQVAVIDSIQTLYFGALTSAPGSVAQVRECTSALMQVA
KRENITLLIVGHVTKEGAIAGPRVLEHLVDTVLYFEGDRYASHRLLRSVKNRFGATHEIGIFEMVDHGLVEVENPSELFL
GNRDEFSPGTATVVACEGTRPIVVELQALVSPTSYASPRRSTTGIEYNRLQQILAVLEKRVGIPLSKLDAYVASAGGLGV
EEPAADLGVAIAVVASFRDRVVDPRTVLIGEVGLGGQVRLVSQMELRLKEAAKLGFKRAIVPRGQVYPEDVGLEIVPVGK
VIEAIVAAIPPQQRFGEDMEEEEGEGQE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=400766 D3800_RS17110 WP_103111889.1 3644230..3645756(-) (radA) [Microcystis aeruginosa NIES-298]
ATGGCGAAATCGCGAACAATATATATCTGTAGCGCTTGTGGGGCGGAATCTCCCCAATGGTTGGGAAAATGCCCCAGTTG
TGACACCTACGGGACGCTAGAAGAACAAGTGATGGCTGGTGGCAATAATCCGGCGGGAAATCGCCCAGGATGGCAAAATA
GTCGCCCAAATAACGGCAAAGGGCAACGCAACCCGCAACCGCGCATCTCGGTGCGCTTCTCGGAAATTACCCAGTATGAA
CAGGAACGTTTTCCCTCTGGTTACGGGGAATTCGATCGCGTTCTCGGCGGTGGCATTGTCCCCGGTTCTCTTGTACTAAT
CGGCGGCGATCCGGGTATCGGCAAATCGACGCTTTTACTGCAAGTTACCAACCAACTCGCCCAAAGATTACCGCGCATCC
TCTACGTTTCCGCTGAAGAATCGGGACAACAGATTAAACTGCGGGCTGCCCGTTTGGGGGTGGGAGTGGTTGCCGTGGAG
TCGGAAAATAACGGCAATGGCAAGGAGAAAAAAGCCTCTGAATCAACCGCAGAACTCGATAATCATCTCTACGTTCTGCC
AGAAACAGATTTAGAGGAAATTTTGCGGGAATTAGAATCTCTACGCCCACAGGTGGCGGTAATTGACAGTATTCAAACTC
TTTATTTTGGGGCGTTAACTTCCGCACCGGGATCCGTCGCCCAAGTTCGCGAATGTACCTCTGCCTTGATGCAGGTGGCA
AAACGGGAGAATATTACTTTATTAATTGTCGGTCATGTGACTAAAGAAGGGGCGATCGCTGGTCCGCGAGTTTTGGAACA
TTTGGTCGATACGGTGTTATATTTTGAAGGCGATCGCTATGCCTCCCATCGTCTCTTAAGATCTGTGAAAAACCGTTTTG
GGGCAACCCATGAGATCGGTATTTTCGAGATGGTGGATCACGGTTTGGTGGAAGTGGAAAACCCCTCAGAATTGTTTTTA
GGCAATCGCGACGAATTTTCCCCGGGTACGGCGACGGTGGTAGCCTGTGAAGGTACACGCCCGATTGTGGTGGAGTTACA
GGCATTAGTTAGCCCCACCAGCTACGCTTCCCCGCGAAGATCGACTACCGGCATAGAATACAACCGATTACAGCAAATTC
TCGCCGTTTTAGAAAAGCGCGTCGGTATTCCTTTATCGAAATTAGATGCCTATGTTGCCTCCGCAGGAGGGTTGGGAGTG
GAAGAACCGGCGGCGGATCTGGGAGTTGCGATCGCTGTTGTCGCTAGTTTTCGCGATCGAGTCGTGGATCCGCGCACAGT
CTTAATCGGGGAAGTGGGATTAGGCGGACAAGTGCGCTTGGTGTCGCAAATGGAACTAAGATTAAAGGAAGCGGCGAAAT
TGGGCTTTAAACGGGCGATTGTCCCCAGAGGTCAAGTTTATCCCGAAGATGTGGGCTTAGAAATTGTTCCAGTTGGCAAG
GTAATCGAGGCAATTGTCGCCGCAATTCCCCCCCAGCAGCGCTTTGGGGAAGATATGGAAGAGGAGGAAGGGGAAGGGCA
AGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(401-463)

KaiC (ATPase)

(85-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.924

95.866

0.488
  radA Streptococcus mitis SK321

46.555

94.291

0.439
  radA Streptococcus pneumoniae D39

47.21

91.732

0.433
  radA Streptococcus pneumoniae TIGR4

47.21

91.732

0.433
  radA Streptococcus mitis NCTC 12261

47.21

91.732

0.433
  radA Streptococcus pneumoniae R6

47.21

91.732

0.433
  radA Streptococcus pneumoniae Rx1

47.21

91.732

0.433

Multiple sequence alignment