Detailed information NTG0400749

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: GJQ55_RS12645
• Genome accession: NZ_CP046056
• Coordinates: 2680343..2681572 (-)
• Length: 409 a.a.
• NCBI ID: WP_228345325.1
• Uniprot ID: A0A9X7V1V4
• Organism: Venatoribacter cucullus strain ASxL5
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2675343..2686572

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GJQ55_RS12625 (GJQ55_12555)	-	2675584..2677470 (+)	1887	WP_228345321.1	M48 family metallopeptidase	-
GJQ55_RS12630 (GJQ55_12560)	rpoH	2677662..2678531 (-)	870	WP_228345322.1	RNA polymerase sigma factor RpoH	-
GJQ55_RS12635 (GJQ55_12565)	ftsX	2678671..2679651 (-)	981	WP_228345323.1	permease-like cell division protein FtsX	-
GJQ55_RS12640 (GJQ55_12570)	ftsE	2679641..2680324 (-)	684	WP_420907167.1	cell division ATP-binding protein FtsE	-
GJQ55_RS12645 (GJQ55_12575)	pilA	2680343..2681572 (-)	1230	WP_228345325.1	signal recognition particle-docking protein FtsY	Machinery gene
GJQ55_RS12650 (GJQ55_12580)	-	2681715..2682485 (+)	771	WP_228345326.1	hypothetical protein	-
GJQ55_RS12655 (GJQ55_12585)	rsmD	2682496..2683050 (+)	555	WP_228345327.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
GJQ55_RS12660 (GJQ55_12590)	-	2683053..2684102 (-)	1050	WP_228345328.1	DUF3080 family protein	-
GJQ55_RS12665 (GJQ55_12595)	-	2684083..2684766 (-)	684	WP_228345329.1	TetR/AcrR family transcriptional regulator	-
GJQ55_RS12670 (GJQ55_12600)	-	2684942..2686390 (+)	1449	WP_228345330.1	coniferyl aldehyde dehydrogenase	-

Sequence

Protein

• Length: 409 a.a.
• Molecular weight: 43774.64 Da
• Isoelectric Point: 4.8598

>NTDB_id=400749 GJQ55_RS12645 WP_228345325.1 2680343..2681572(-) (pilA) [Venatoribacter cucullus strain ASxL5]
MFDFFKRKKAAAAEAEPKQPEAAPAETESGQSATDTGTVTAEAAETTGADVANQVNTEDRAEYKVTPVAAPEPAASPEPV
DAPAQPTEQPQDKPLDNQKKPGFFSRIRAGLSKTRHGFTDGLANLLLGKKEIDDDLLEELETQLIMADVGVETTRAIMAR
LTARVGRKELKDSGALYNALIAELQETLEKVQAPLDINAGHKPYVILMVGINGVGKTTTIGKLAKQFQQAGKSVMLAAGD
TFRAAAVEQLQVWGERNNVPVIAQHTGADSASVLFDALQAAQARKVDILIADTAGRLHTKDNLMQELEKVVRVMKKLDPT
APHEVMLVLDAGTGQNAINQAKQFQAAVGVTGLTLTKLDGTAKGGIIFALAQQFELPVRYIGVGEGIDDLRPFNAEEFTK
ALFQQEQAG

Nucleotide

• Length: 1230 bp

>NTDB_id=400749 GJQ55_RS12645 WP_228345325.1 2680343..2681572(-) (pilA) [Venatoribacter cucullus strain ASxL5]
ATGTTTGATTTTTTTAAACGCAAAAAAGCGGCCGCCGCAGAAGCAGAGCCTAAGCAACCTGAAGCGGCGCCGGCAGAGAC
GGAATCCGGCCAGTCTGCTACCGATACCGGTACGGTAACCGCCGAGGCTGCAGAAACCACCGGGGCAGATGTCGCTAATC
AGGTAAATACCGAAGATCGTGCCGAATATAAGGTTACCCCGGTAGCCGCCCCCGAACCTGCCGCCAGTCCCGAACCGGTT
GACGCACCGGCACAGCCGACCGAGCAACCGCAGGATAAACCGCTGGATAACCAGAAAAAGCCTGGTTTTTTCAGCCGTAT
CCGCGCCGGGTTAAGCAAAACCCGCCACGGCTTTACCGATGGGTTGGCCAATCTGCTGCTGGGCAAAAAAGAAATTGATG
ACGATCTGCTGGAAGAGCTGGAAACCCAGTTGATCATGGCGGACGTTGGCGTGGAAACCACCCGCGCCATCATGGCCCGT
TTAACCGCCCGGGTTGGCCGCAAAGAGCTGAAGGATTCCGGCGCGCTGTACAACGCTTTAATTGCTGAGCTGCAGGAAAC
GCTCGAAAAAGTACAGGCGCCGCTGGACATTAACGCCGGCCACAAACCCTATGTGATTCTGATGGTCGGCATTAACGGCG
TGGGCAAAACCACCACCATCGGCAAGCTGGCCAAGCAATTTCAGCAGGCCGGTAAAAGCGTGATGCTGGCTGCCGGCGAT
ACCTTCCGGGCCGCCGCGGTTGAGCAGCTGCAGGTGTGGGGCGAGCGCAACAACGTGCCGGTGATTGCCCAGCACACCGG
TGCCGATTCCGCCTCGGTGCTGTTCGATGCGCTGCAGGCGGCGCAGGCGCGTAAGGTCGATATACTGATTGCCGACACCG
CCGGCCGTCTGCACACCAAAGACAACCTGATGCAGGAGCTGGAAAAAGTGGTGCGGGTGATGAAAAAACTCGACCCGACC
GCCCCGCATGAAGTGATGCTGGTACTGGATGCCGGTACCGGTCAGAACGCCATTAATCAGGCCAAACAATTCCAGGCCGC
TGTTGGGGTCACCGGCTTAACCCTGACCAAACTCGATGGCACCGCCAAAGGCGGGATCATCTTTGCACTGGCGCAGCAGT
TTGAACTGCCGGTGCGTTACATCGGCGTTGGCGAAGGCATTGATGACCTGCGCCCGTTCAACGCTGAAGAATTCACCAAA
GCCCTGTTCCAGCAGGAACAGGCCGGCTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (204-403)

• SRP54-type protein, helical bundle domain (SRP54_N) (119-184)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	47.847	100	0.489