Detailed information NTG0400652

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HUR94_RS14490
• Genome accession: NZ_CP054665
• Coordinates: 2918461..2919453 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli strain IGC_EcoliInv_1.1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2913461..2924453

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUR94_RS14470	otnK	2914237..2915403 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
HUR94_RS14475	ygbL	2915495..2916133 (+)	639	WP_001278994.1	aldolase	-
HUR94_RS14480	ygbM	2916138..2916914 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
HUR94_RS14485	ygbN	2917003..2918367 (+)	1365	WP_000104441.1	GntP family transporter	-
HUR94_RS14490	rpoS	2918461..2919453 (-)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
HUR94_RS14495	nlpD	2919516..2920610 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
HUR94_RS14500	pcm	2920795..2921421 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HUR94_RS14505	surE	2921415..2922176 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HUR94_RS14510	truD	2922157..2923206 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
HUR94_RS14515	ispF	2923203..2923682 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HUR94_RS14520	ispD	2923682..2924392 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=400652 HUR94_RS14490 WP_000081588.1 2918461..2919453(-) (rpoS) [Escherichia coli strain IGC_EcoliInv_1.1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=400652 HUR94_RS14490 WP_000081588.1 2918461..2919453(-) (rpoS) [Escherichia coli strain IGC_EcoliInv_1.1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715