Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   GJD93_RS13270 Genome accession   NZ_CP046045
Coordinates   2527378..2527704 (-) Length   108 a.a.
NCBI ID   WP_004975751.1    Uniprot ID   A0A2A5PGU4
Organism   Acinetobacter towneri strain 19110F47     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2522378..2532704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJD93_RS13250 (GJD93_13240) - 2522600..2523250 (-) 651 WP_096901899.1 FHA domain-containing protein -
  GJD93_RS13255 (GJD93_13245) gspD 2523320..2525575 (-) 2256 WP_131260972.1 type II secretion system secretin GspD -
  GJD93_RS13260 (GJD93_13250) - 2525636..2526475 (-) 840 WP_004975757.1 type II secretion system protein N -
  GJD93_RS13265 (GJD93_13255) gspN 2526475..2527215 (-) 741 WP_154321136.1 type II secretion system protein N -
  GJD93_RS13270 (GJD93_13260) hns 2527378..2527704 (-) 327 WP_004975751.1 H-NS family nucleoid-associated regulatory protein Regulator
  GJD93_RS13275 (GJD93_13265) - 2527850..2528281 (-) 432 WP_154321137.1 acyl-CoA thioesterase -
  GJD93_RS13280 (GJD93_13270) - 2528291..2529484 (-) 1194 WP_154321138.1 heme biosynthesis protein HemY -
  GJD93_RS13285 (GJD93_13275) - 2529485..2530321 (-) 837 WP_004975747.1 hypothetical protein -
  GJD93_RS13290 (GJD93_13280) - 2530318..2531097 (-) 780 WP_004975746.1 uroporphyrinogen-III synthase -
  GJD93_RS13295 (GJD93_13285) hemC 2531119..2532039 (-) 921 WP_154321288.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12180.06 Da        Isoelectric Point: 9.8659

>NTDB_id=400651 GJD93_RS13270 WP_004975751.1 2527378..2527704(-) (hns) [Acinetobacter towneri strain 19110F47]
MMPDISNLSVEQLKRLQAEAEALIATKKDQAIEDAYNQILAIADNLGLSIEQILEVGESKRKKSPRKTVAPRYRSKINST
DTWTGRGKKPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=400651 GJD93_RS13270 WP_004975751.1 2527378..2527704(-) (hns) [Acinetobacter towneri strain 19110F47]
ATGATGCCTGATATTAGCAATTTGTCTGTAGAACAGTTAAAGCGTTTACAAGCTGAAGCGGAAGCATTAATTGCCACGAA
AAAAGATCAAGCAATTGAAGATGCCTATAATCAAATTTTAGCGATTGCAGACAATTTGGGTTTAAGCATTGAGCAGATTT
TGGAAGTTGGCGAAAGCAAGCGTAAGAAAAGCCCACGTAAAACTGTAGCGCCACGTTATCGTAGCAAAATCAATTCTACA
GATACTTGGACTGGTCGTGGTAAAAAACCACGCTGGTTAGTCGCTGAATTAGAAAAAGGCGCAAAACTTGAAGATTTTCT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A5PGU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

75.926

100

0.759

Multiple sequence alignment