Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   GJD93_RS12235 Genome accession   NZ_CP046045
Coordinates   2303072..2303929 (-) Length   285 a.a.
NCBI ID   WP_171062604.1    Uniprot ID   -
Organism   Acinetobacter towneri strain 19110F47     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2298072..2308929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJD93_RS12220 (GJD93_12210) miaB 2299766..2301220 (+) 1455 WP_004976194.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  GJD93_RS12225 (GJD93_12215) - 2301260..2302333 (+) 1074 WP_154321054.1 PhoH family protein -
  GJD93_RS12230 (GJD93_12220) ybeY 2302377..2302859 (+) 483 WP_004976192.1 rRNA maturation RNase YbeY -
  GJD93_RS12235 (GJD93_12225) tonB2 2303072..2303929 (-) 858 WP_171062604.1 energy transducer TonB Machinery gene
  GJD93_RS12240 (GJD93_12230) - 2304205..2304879 (+) 675 WP_004976182.1 hypothetical protein -
  GJD93_RS12245 (GJD93_12235) - 2305025..2305738 (+) 714 WP_004976176.1 DUF3108 domain-containing protein -
  GJD93_RS12250 (GJD93_12240) - 2305867..2306442 (+) 576 WP_004976172.1 xanthine phosphoribosyltransferase -
  GJD93_RS12255 (GJD93_12245) - 2306705..2307103 (+) 399 WP_154321055.1 hypothetical protein -
  GJD93_RS12260 (GJD93_12250) - 2307165..2307356 (-) 192 WP_004976167.1 hypothetical protein -
  GJD93_RS12265 (GJD93_12255) wrbA 2307926..2308522 (-) 597 WP_154321285.1 NAD(P)H:quinone oxidoreductase -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32209.53 Da        Isoelectric Point: 6.2940

>NTDB_id=400646 GJD93_RS12235 WP_171062604.1 2303072..2303929(-) (tonB2) [Acinetobacter towneri strain 19110F47]
MPSTQDWWKDPIFAAALLVAAVLHALILAVQFAAPQQSDAAVKEIAVSVRMSDAKVEDADFLAQADQQGSGTFREEHRMS
SDMPAPMTEQSAGEQQLESLERMQQQRELNFEEKVLMTTLSWQKQAAENQRKKAMQELNSQFQAKAAMVASIEAQYLQRQ
QNFSRQQKIKTIDGIQAKQDNTAGYMEKFRQKVEFYGNRYYPEQAKAQNLAGEVRLMVILNNNGGIRAIRLIESSGHAML
DEAAKASVRKAAPFGAFDAKMKDISELRIVRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=400646 GJD93_RS12235 WP_171062604.1 2303072..2303929(-) (tonB2) [Acinetobacter towneri strain 19110F47]
ATGCCTTCTACGCAAGATTGGTGGAAAGATCCTATTTTTGCTGCAGCGTTGCTGGTGGCTGCTGTATTGCACGCATTAAT
TTTGGCCGTGCAGTTTGCTGCACCGCAACAAAGCGATGCTGCGGTCAAAGAGATTGCGGTATCGGTACGCATGAGCGATG
CAAAAGTTGAAGATGCAGATTTCTTAGCCCAAGCCGATCAGCAAGGTTCAGGTACGTTCCGTGAAGAACATCGCATGTCG
AGTGATATGCCTGCACCCATGACTGAACAAAGTGCAGGGGAGCAGCAATTGGAAAGTTTAGAGCGTATGCAGCAACAGCG
TGAATTAAACTTTGAAGAAAAAGTATTGATGACCACGCTCAGTTGGCAAAAACAGGCTGCAGAAAATCAGCGCAAAAAAG
CCATGCAGGAGTTGAATAGCCAATTCCAAGCTAAGGCTGCCATGGTCGCCAGTATTGAAGCGCAATATTTACAACGCCAA
CAAAATTTTAGCCGTCAGCAAAAAATTAAAACCATCGATGGGATTCAGGCCAAGCAAGACAACACCGCTGGTTATATGGA
AAAATTCCGTCAAAAAGTCGAATTTTATGGTAACCGTTATTATCCAGAACAAGCCAAAGCACAGAATTTGGCAGGCGAAG
TACGTTTAATGGTGATTTTGAACAACAATGGTGGGATTCGTGCCATTCGTTTAATTGAAAGTTCAGGACATGCCATGCTA
GATGAAGCAGCCAAAGCTTCGGTGCGTAAAGCCGCACCTTTTGGTGCATTTGATGCCAAAATGAAAGATATTTCTGAATT
GCGGATTGTACGGACGTGGCGTTTTGACCCTGCTGAAGCTGAGTTTGAGGTGCGCTAG

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

72.043

97.895

0.705

Multiple sequence alignment