Detailed information
Bioinformatically predicted
Overview
| Name | pilV | Type | Machinery gene |
| Locus tag | GJD93_RS02635 | Genome accession | NZ_CP046045 |
| Coordinates | 331555..332061 (+) | Length | 168 a.a. |
| NCBI ID | WP_154320269.1 | Uniprot ID | A0AAP9KI48 |
| Organism | Acinetobacter towneri strain 19110F47 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 318521..338588 | 331555..332061 | within | 0 |
Gene organization within MGE regions
Location: 318521..338588
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GJD93_RS02555 (GJD93_02555) | - | 318521..319402 (+) | 882 | WP_154320257.1 | IS982 family transposase | - |
| GJD93_RS02560 (GJD93_02560) | - | 319392..319556 (-) | 165 | WP_154320258.1 | hypothetical protein | - |
| GJD93_RS02565 (GJD93_02565) | - | 319553..320599 (-) | 1047 | WP_154320259.1 | AAA family ATPase | - |
| GJD93_RS14735 (GJD93_02570) | - | 321215..321562 (+) | 348 | WP_154320260.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| GJD93_RS14740 (GJD93_02575) | - | 321627..321788 (+) | 162 | Protein_307 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| GJD93_RS02580 (GJD93_02580) | - | 321850..322782 (+) | 933 | WP_154320262.1 | IS5-like element ISAba12 family transposase | - |
| GJD93_RS14560 | - | 322805..323116 (+) | 312 | WP_154320263.1 | hypothetical protein | - |
| GJD93_RS02590 (GJD93_02585) | - | 323210..324844 (+) | 1635 | WP_154320264.1 | PglL family O-oligosaccharyltransferase | - |
| GJD93_RS02595 (GJD93_02590) | bfr | 324932..325396 (-) | 465 | WP_154320265.1 | bacterioferritin | - |
| GJD93_RS02600 (GJD93_02595) | - | 325644..325838 (-) | 195 | WP_154320266.1 | bacterioferritin-associated ferredoxin | - |
| GJD93_RS02605 (GJD93_02600) | - | 326011..326394 (-) | 384 | WP_004809961.1 | RidA family protein | - |
| GJD93_RS02610 (GJD93_02605) | - | 326517..328619 (-) | 2103 | WP_154320267.1 | RelA/SpoT family protein | - |
| GJD93_RS02615 (GJD93_02610) | rpoZ | 328842..329123 (-) | 282 | WP_004809957.1 | DNA-directed RNA polymerase subunit omega | - |
| GJD93_RS02620 (GJD93_02615) | gmk | 329200..329823 (-) | 624 | WP_131260628.1 | guanylate kinase | - |
| GJD93_RS02625 (GJD93_02620) | ispH | 329958..330908 (+) | 951 | WP_154320268.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| GJD93_RS02630 (GJD93_02625) | - | 331073..331555 (+) | 483 | WP_154321236.1 | GspH/FimT family pseudopilin | - |
| GJD93_RS02635 (GJD93_02630) | pilV | 331555..332061 (+) | 507 | WP_154320269.1 | type IV pilus modification protein PilV | Machinery gene |
| GJD93_RS02640 (GJD93_02635) | pilW | 332061..332990 (+) | 930 | WP_228274490.1 | PilW family protein | Machinery gene |
| GJD93_RS02645 (GJD93_02640) | - | 332987..333796 (+) | 810 | WP_154320271.1 | hypothetical protein | - |
| GJD93_RS02650 (GJD93_02645) | pilY1 | 333813..337661 (+) | 3849 | WP_410169794.1 | pilus assembly protein PilY | Machinery gene |
| GJD93_RS02655 (GJD93_02650) | - | 337648..338160 (+) | 513 | WP_154320272.1 | type IV pilin protein | - |
| GJD93_RS02660 (GJD93_02655) | - | 338154..338588 (+) | 435 | WP_154320273.1 | type IV pilin protein | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 17733.58 Da Isoelectric Point: 8.9519
>NTDB_id=400625 GJD93_RS02635 WP_154320269.1 331555..332061(+) (pilV) [Acinetobacter towneri strain 19110F47]
MKKNQIGVGMVEVLVALILLAIGVLGYSALQLRAIDAGDEALVKSQSVMLLRGLTESIRVNTQGQGSYPAAVRSYASKNA
PSAPKSCLNSTCTPAQMATYDAYLVARAANQIGVVVSMHQCPGVQSVRRQCLFAAWGDTTVSASSYAGCMSTRGVYVANA
RCVMMEAY
MKKNQIGVGMVEVLVALILLAIGVLGYSALQLRAIDAGDEALVKSQSVMLLRGLTESIRVNTQGQGSYPAAVRSYASKNA
PSAPKSCLNSTCTPAQMATYDAYLVARAANQIGVVVSMHQCPGVQSVRRQCLFAAWGDTTVSASSYAGCMSTRGVYVANA
RCVMMEAY
Nucleotide
Download Length: 507 bp
>NTDB_id=400625 GJD93_RS02635 WP_154320269.1 331555..332061(+) (pilV) [Acinetobacter towneri strain 19110F47]
ATGAAAAAAAATCAGATAGGCGTAGGCATGGTTGAGGTTTTAGTTGCCTTAATATTGTTGGCTATTGGTGTTTTAGGTTA
TTCCGCATTGCAATTGCGAGCGATTGATGCGGGCGATGAAGCTTTAGTTAAGTCTCAATCTGTCATGTTGTTACGTGGGT
TGACTGAAAGCATTCGTGTAAATACGCAGGGGCAGGGGAGTTATCCTGCGGCAGTAAGGTCGTATGCATCGAAGAATGCA
CCTTCAGCGCCTAAAAGCTGTTTGAATTCAACTTGTACACCTGCACAAATGGCAACTTATGATGCCTATTTGGTTGCACG
TGCTGCAAATCAAATAGGTGTTGTAGTTAGTATGCATCAATGTCCTGGGGTGCAGTCAGTGCGTAGACAATGCTTATTTG
CAGCATGGGGAGATACAACAGTTTCTGCCAGTAGTTATGCGGGGTGCATGAGTACAAGGGGTGTGTATGTCGCTAATGCG
AGATGTGTAATGATGGAGGCATACTAA
ATGAAAAAAAATCAGATAGGCGTAGGCATGGTTGAGGTTTTAGTTGCCTTAATATTGTTGGCTATTGGTGTTTTAGGTTA
TTCCGCATTGCAATTGCGAGCGATTGATGCGGGCGATGAAGCTTTAGTTAAGTCTCAATCTGTCATGTTGTTACGTGGGT
TGACTGAAAGCATTCGTGTAAATACGCAGGGGCAGGGGAGTTATCCTGCGGCAGTAAGGTCGTATGCATCGAAGAATGCA
CCTTCAGCGCCTAAAAGCTGTTTGAATTCAACTTGTACACCTGCACAAATGGCAACTTATGATGCCTATTTGGTTGCACG
TGCTGCAAATCAAATAGGTGTTGTAGTTAGTATGCATCAATGTCCTGGGGTGCAGTCAGTGCGTAGACAATGCTTATTTG
CAGCATGGGGAGATACAACAGTTTCTGCCAGTAGTTATGCGGGGTGCATGAGTACAAGGGGTGTGTATGTCGCTAATGCG
AGATGTGTAATGATGGAGGCATACTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilV | Acinetobacter baumannii D1279779 |
53.073 |
100 |
0.565 |
| pilV | Acinetobacter baylyi ADP1 |
37.791 |
100 |
0.387 |