Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HUR94_RS02395 Genome accession   NZ_CP054665
Coordinates   487444..488049 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain IGC_EcoliInv_1.1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 482444..493049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUR94_RS02365 rsmS 483149..483310 (-) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -
  HUR94_RS02370 priC 483324..483851 (-) 528 WP_000844874.1 primosomal replication protein N'' -
  HUR94_RS02375 ybaN 483921..484298 (+) 378 WP_001188905.1 DUF454 family protein -
  HUR94_RS02380 apt 484451..485002 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  HUR94_RS02385 dnaX 485131..487062 (+) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  HUR94_RS02390 ybaB 487115..487444 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  HUR94_RS02395 recR 487444..488049 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  HUR94_RS02400 htpG 488159..490033 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  HUR94_RS02405 adk 490214..490858 (+) 645 WP_001220233.1 adenylate kinase -
  HUR94_RS02410 hemH 491094..492056 (+) 963 WP_001250103.1 ferrochelatase -
  HUR94_RS02415 aes 492053..493012 (-) 960 WP_000801813.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=400618 HUR94_RS02395 WP_001195025.1 487444..488049(+) (recR) [Escherichia coli strain IGC_EcoliInv_1.1]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=400618 HUR94_RS02395 WP_001195025.1 487444..488049(+) (recR) [Escherichia coli strain IGC_EcoliInv_1.1]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment