Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HUR93_RS19085 Genome accession   NZ_CP054662
Coordinates   3848080..3848685 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain IGC_RcoliRes_1.1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3843080..3853685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUR93_RS19065 aes 3843117..3844076 (+) 960 WP_000801846.1 acetyl esterase -
  HUR93_RS19070 hemH 3844073..3845035 (-) 963 WP_061892161.1 ferrochelatase -
  HUR93_RS19075 adk 3845271..3845915 (-) 645 WP_001220233.1 adenylate kinase -
  HUR93_RS19080 htpG 3846096..3847970 (-) 1875 WP_000678208.1 molecular chaperone HtpG -
  HUR93_RS19085 recR 3848080..3848685 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  HUR93_RS19090 ybaB 3848685..3849014 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  HUR93_RS19095 dnaX 3849067..3850998 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  HUR93_RS19100 apt 3851127..3851678 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  HUR93_RS19105 ybaN 3851831..3852208 (-) 378 WP_001188905.1 DUF454 family protein -
  HUR93_RS19110 priC 3852278..3852805 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  HUR93_RS19115 rsmS 3852819..3852980 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=400583 HUR93_RS19085 WP_001195025.1 3848080..3848685(-) (recR) [Escherichia coli strain IGC_RcoliRes_1.1]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=400583 HUR93_RS19085 WP_001195025.1 3848080..3848685(-) (recR) [Escherichia coli strain IGC_RcoliRes_1.1]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443