Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   GJS34_RS00800 Genome accession   NZ_CP046042
Coordinates   140858..143299 (+) Length   813 a.a.
NCBI ID   WP_038674622.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain TN-714097     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 135858..148299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJS34_RS00770 (GJS34_00770) rpsB 136245..137015 (-) 771 WP_012677249.1 30S ribosomal protein S2 -
  GJS34_RS00775 (GJS34_00775) ahpF 137276..138808 (-) 1533 WP_014622154.1 alkyl hydroperoxide reductase subunit F -
  GJS34_RS00780 (GJS34_00780) ahpC 138829..139389 (-) 561 WP_012514798.1 alkyl hydroperoxide reductase subunit C -
  GJS34_RS00790 (GJS34_00790) - 140022..140225 (+) 204 WP_037583955.1 cold-shock protein -
  GJS34_RS00795 (GJS34_00795) - 140397..140858 (+) 462 WP_012514800.1 CtsR family transcriptional regulator -
  GJS34_RS00800 (GJS34_00800) clpC 140858..143299 (+) 2442 WP_038674622.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  GJS34_RS10725 (GJS34_00805) - 143647..143792 (-) 146 Protein_126 putative holin-like toxin -
  GJS34_RS00810 (GJS34_00810) - 144072..144503 (+) 432 WP_014622157.1 hypothetical protein -
  GJS34_RS00815 (GJS34_00815) - 144724..145155 (+) 432 WP_014622158.1 hypothetical protein -
  GJS34_RS00820 (GJS34_00820) - 145157..146446 (+) 1290 WP_014622159.1 lipase family protein -
  GJS34_RS00825 (GJS34_00825) - 146428..146820 (+) 393 WP_014622160.1 hypothetical protein -
  GJS34_RS00830 (GJS34_00830) - 146801..147091 (+) 291 WP_038674620.1 hypothetical protein -
  GJS34_RS00835 (GJS34_00835) groES 147390..147677 (+) 288 WP_012514806.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 813 a.a.        Molecular weight: 90383.19 Da        Isoelectric Point: 6.4365

>NTDB_id=400568 GJS34_RS00800 WP_038674622.1 140858..143299(+) (clpC) [Streptococcus equi subsp. zooepidemicus strain TN-714097]
MMTYSLKMQDIFNQAQFQAERFDSPYLETWHILLAMVAVDHSLAAMVLSEFERKIRAEEYEAAAILAMGKSPKEVTSVQF
KPQSKALSEILAFAHAICQVTNEHEVGSEHVLFAILLNPDIMASRLLELAGYRLKDSGKGEPRFADLRKAIELNAGYSKE
TIKAIHELRKPKKSKSVGTFSEMMKPQSTAGELSDFTRDLTEMARQGLLEPVIGREKEVSRMVQVLCRKTKNNPVLVGDA
GVGKTALAYGLAQRIANGAIPYELQDMRVLELDMMSVVAGTRFRGDFEERMNQLIDDIEADGKIILFVDELHTIMGSGSG
IDSTLDAANILKPALSRGTLHMVGATTQEEYQKHIEKDAALSRRFAKILIEEPSVDDAYQILLGLRASYEQYHNVTISDK
AVHTAVKLAQRYLTSKQLPDSAIDLLDEASAMVQSMVKKTQPDFITPLDQALLDGDMVKVSAILAKEDKQPKLKPTAVTE
DDMLHTLSKLSGIPLEKLTQADSKKYLNLEKELHKRVVGQEMAVSAIARAIRRNQSGIRTGRRPIGSFMFLGPTGVGKTE
LAKALAELLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYDEGGELTEKVRNKPYAVLLFDEVEKAHPDIFNILLQV
LDDGMLTDSRGRKVDFSNTIIIMTSNLGATALRDDKTVGFGAKAIGHDHQAMEKRILEELKKAYRPEFINRIDEKVVFHS
LTQENMRDVVKIMVKPLIAALAEKHISLKFQPSALKYLSESGYDVEMGARPLRRTLQTEVEDRLAELMLSGELSSGQSLK
IGVSRGKLAFDIA

Nucleotide


Download         Length: 2442 bp        

>NTDB_id=400568 GJS34_RS00800 WP_038674622.1 140858..143299(+) (clpC) [Streptococcus equi subsp. zooepidemicus strain TN-714097]
GTGATGACTTATTCATTAAAGATGCAAGACATTTTTAATCAGGCTCAATTTCAGGCAGAGCGCTTTGATAGTCCCTACCT
TGAGACCTGGCACATTTTATTAGCTATGGTAGCCGTTGATCATTCTTTAGCAGCCATGGTTTTAAGCGAATTTGAACGAA
AGATCAGAGCTGAAGAGTATGAGGCAGCTGCCATTTTAGCTATGGGAAAAAGTCCCAAGGAGGTGACTTCTGTCCAATTC
AAGCCGCAATCCAAGGCCTTATCAGAAATACTAGCATTTGCGCATGCTATCTGTCAGGTTACCAATGAGCATGAGGTTGG
CTCAGAGCATGTGCTTTTTGCTATTTTGCTCAATCCGGATATTATGGCTAGTCGTCTGTTAGAATTGGCAGGCTATAGGC
TTAAGGATTCTGGCAAGGGAGAGCCTAGGTTTGCGGATTTGCGTAAGGCAATTGAGCTAAATGCCGGCTATAGTAAGGAA
ACCATTAAGGCGATTCATGAGTTGCGTAAGCCTAAAAAGAGTAAATCAGTAGGCACCTTTTCTGAAATGATGAAGCCACA
GAGTACAGCTGGTGAGCTATCAGACTTTACAAGAGACCTGACAGAGATGGCAAGACAGGGCTTATTAGAGCCAGTCATCG
GACGAGAAAAAGAGGTGTCACGTATGGTTCAGGTGCTTTGTCGTAAGACGAAAAATAATCCTGTTCTTGTTGGTGATGCG
GGTGTCGGAAAAACTGCTCTAGCTTATGGCTTAGCGCAGCGAATTGCTAATGGAGCCATTCCTTATGAATTACAAGACAT
GCGTGTCTTGGAGCTTGACATGATGAGTGTGGTTGCAGGTACCCGTTTTCGTGGGGATTTTGAAGAGCGCATGAATCAAC
TCATTGACGATATTGAAGCAGATGGTAAGATCATTTTGTTTGTCGATGAGCTACATACCATTATGGGATCAGGAAGTGGT
ATTGACAGCACACTTGATGCCGCTAATATTCTAAAGCCAGCCCTTTCTCGCGGTACCCTGCATATGGTTGGCGCTACAAC
TCAAGAGGAATATCAAAAGCACATTGAAAAGGACGCAGCCCTTTCTCGTCGCTTTGCCAAGATATTGATTGAGGAGCCTA
GTGTCGATGATGCTTATCAGATTTTGCTTGGCTTGAGGGCCTCCTATGAACAGTACCATAATGTAACCATCTCTGATAAA
GCTGTTCATACTGCTGTGAAGCTGGCCCAGCGCTACCTGACGAGTAAGCAGCTTCCAGATTCAGCGATTGATCTGCTTGA
TGAAGCTAGTGCGATGGTACAAAGCATGGTTAAAAAGACGCAGCCTGACTTTATAACGCCGCTTGATCAAGCCCTGCTTG
ATGGTGATATGGTCAAGGTATCCGCTATTTTAGCCAAAGAGGATAAGCAACCAAAGCTAAAACCAACAGCAGTTACTGAA
GATGATATGTTACACACCTTAAGCAAGCTATCAGGTATTCCCCTAGAAAAACTAACTCAGGCGGATAGTAAAAAATACCT
GAATCTGGAAAAGGAATTGCATAAGCGTGTTGTTGGTCAGGAAATGGCTGTTTCTGCTATTGCACGAGCCATTCGTCGTA
ACCAGTCAGGCATTCGCACAGGCAGGCGTCCGATTGGCTCCTTTATGTTTCTTGGTCCAACCGGTGTCGGAAAAACAGAG
CTAGCAAAGGCCTTGGCCGAATTACTCTTTGATGATGAGTCAGCCCTTATTCGTTTTGATATGTCTGAGTATATGGAAAA
ATTTGCAGCCTCCCGTCTTAATGGGGCTCCTCCTGGCTATGTTGGCTATGATGAGGGAGGAGAGCTAACCGAAAAGGTTA
GAAATAAGCCTTATGCCGTTCTTCTTTTTGATGAGGTTGAAAAGGCTCACCCAGACATCTTTAATATCCTGCTGCAGGTC
CTTGATGATGGTATGTTAACAGATAGTCGTGGACGTAAGGTTGATTTTTCAAACACGATTATTATCATGACGAGCAACCT
AGGAGCAACTGCTCTAAGAGATGATAAGACGGTTGGATTTGGCGCTAAAGCGATCGGTCATGACCATCAAGCAATGGAAA
AGCGTATTTTAGAAGAATTGAAAAAGGCTTATCGGCCTGAATTTATCAACAGAATTGATGAGAAGGTGGTCTTCCATAGC
CTAACACAGGAAAACATGCGTGATGTGGTGAAAATTATGGTTAAGCCGCTGATTGCAGCCTTGGCAGAAAAGCATATTAG
CCTTAAGTTCCAGCCATCAGCTCTCAAGTACTTGTCTGAATCTGGTTACGATGTTGAAATGGGTGCTCGCCCACTTCGTC
GCACCTTGCAAACAGAGGTTGAGGACAGGTTAGCAGAATTAATGCTGTCAGGAGAGTTATCAAGCGGTCAAAGCCTCAAG
ATTGGTGTATCACGTGGAAAACTAGCTTTTGATATCGCTTAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(543-714)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(721-800)

AAA lid domain (AAA_lid_9)

(374-453)

Clp amino terminal domain, pathogenicity island component (Clp_N)

(95-131)

Clp amino terminal domain, pathogenicity island component (Clp_N)

(15-51)

ATPase family associated with various cellular activities (AAA) (AAA)

(235-367)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Streptococcus mutans UA159

74.416

100

0.744
  clpC Streptococcus thermophilus LMD-9

72.304

100

0.726
  clpC Streptococcus thermophilus LMG 18311

72.059

100

0.723
  clpC Streptococcus pneumoniae Rx1

65.725

100

0.658
  clpC Streptococcus pneumoniae D39

65.725

100

0.658
  clpC Streptococcus pneumoniae TIGR4

65.602

100

0.657
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

48.865

100

0.503
  clpC Bacillus subtilis subsp. subtilis str. 168

44.072

100

0.453

Multiple sequence alignment