Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GJS33_RS08600 Genome accession   NZ_CP046041
Coordinates   1810683..1811753 (-) Length   356 a.a.
NCBI ID   WP_012516279.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain AZ-45470     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1805683..1816753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJS33_RS08595 (GJS33_08595) amiF 1809767..1810690 (-) 924 WP_126437052.1 ATP-binding cassette domain-containing protein Regulator
  GJS33_RS08600 (GJS33_08600) amiE 1810683..1811753 (-) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  GJS33_RS08605 (GJS33_08605) amiD 1811762..1812688 (-) 927 WP_043031408.1 oligopeptide ABC transporter permease OppC Regulator
  GJS33_RS08610 (GJS33_08610) amiC 1812688..1814187 (-) 1500 WP_014623463.1 ABC transporter permease Regulator
  GJS33_RS08615 (GJS33_08615) amiA3 1814251..1816227 (-) 1977 WP_043026548.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39734.86 Da        Isoelectric Point: 6.1118

>NTDB_id=400545 GJS33_RS08600 WP_012516279.1 1810683..1811753(-) (amiE) [Streptococcus equi subsp. zooepidemicus strain AZ-45470]
MTEKQEIILSAKNIVVEFDVRDRVLTAIRDVSLDLYKGEVLAVVGESGSGKSVLTKTFTGMLEANGRVASGTITYAGQEL
TELKNHKDWEAIRGSKIATIFQDPMTSLDPIQTIGSQITEVIVKHQKKSRSEAKALAIDYMTRVGIPEPEKRFGEYPFQY
SGGMRQRIVIAIALACKPDILICDEPTTALDVTIQAQIIDLLKTLQKEYHFTIIFITHDLGVVASIADKVAVMYAGEIIE
YGKVEEIFYDPRHPYTWSLLSSLPQLADEKGVLFSIPGTPPSLYKPIVGDAFAPRSQYAMAIDFEETVPRFTISDTHWAK
TWLLHPDAPKVQKPAVIQDLHQKILKKMSRQEEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=400545 GJS33_RS08600 WP_012516279.1 1810683..1811753(-) (amiE) [Streptococcus equi subsp. zooepidemicus strain AZ-45470]
ATGACTGAAAAACAAGAAATTATATTAAGTGCTAAAAATATTGTTGTAGAGTTTGATGTGCGTGATCGTGTACTGACCGC
TATTCGTGATGTTTCTCTTGATTTGTATAAGGGAGAGGTATTGGCTGTTGTTGGTGAGTCAGGCTCTGGCAAGTCTGTTT
TAACTAAGACATTTACAGGAATGCTGGAGGCAAATGGACGTGTTGCTTCAGGGACGATAACCTATGCAGGTCAAGAACTA
ACAGAGCTTAAAAATCATAAAGACTGGGAAGCTATTCGCGGCTCTAAAATTGCCACTATCTTTCAGGACCCAATGACTAG
TCTAGATCCGATTCAAACGATTGGCAGCCAGATTACTGAGGTTATTGTTAAGCATCAGAAAAAATCTAGATCAGAGGCTA
AGGCTTTAGCAATCGACTATATGACAAGAGTCGGTATTCCTGAGCCAGAAAAGCGTTTTGGAGAGTATCCTTTCCAATAT
TCTGGCGGTATGAGACAGCGTATTGTTATTGCCATTGCCCTAGCTTGTAAGCCAGATATTCTGATCTGTGATGAGCCGAC
AACAGCTCTTGACGTTACCATCCAGGCTCAGATTATTGATCTATTAAAGACGCTTCAAAAAGAGTATCACTTCACCATTA
TCTTTATCACGCATGACCTAGGAGTGGTTGCAAGTATTGCTGACAAGGTTGCTGTTATGTACGCAGGGGAGATTATTGAA
TACGGAAAGGTTGAGGAAATCTTCTATGATCCTCGTCACCCCTACACATGGAGCTTATTATCTAGCCTACCGCAATTGGC
AGATGAAAAGGGCGTTCTGTTTTCAATTCCAGGGACACCTCCGTCCCTATACAAGCCAATTGTTGGTGATGCCTTTGCGC
CACGCTCTCAGTATGCTATGGCCATTGATTTTGAAGAAACAGTTCCTCGTTTTACGATCAGTGACACGCACTGGGCAAAA
ACCTGGCTCCTACACCCAGATGCTCCTAAGGTTCAAAAACCAGCTGTTATTCAGGATTTACACCAAAAAATATTGAAAAA
AATGTCACGCCAGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

80

100

0.809
  amiE Streptococcus thermophilus LMG 18311

78.889

100

0.798
  amiE Streptococcus thermophilus LMD-9

78.889

100

0.798
  oppD Streptococcus mutans UA159

56.456

93.539

0.528

Multiple sequence alignment