Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GJS33_RS01265 Genome accession   NZ_CP046041
Coordinates   245061..246422 (+) Length   453 a.a.
NCBI ID   WP_154298678.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain AZ-45470     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 240061..251422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJS33_RS01250 (GJS33_01250) - 241636..243432 (+) 1797 WP_154298677.1 ABC transporter ATP-binding protein -
  GJS33_RS01255 (GJS33_01255) - 243583..244350 (+) 768 WP_043030408.1 epoxyqueuosine reductase QueH -
  GJS33_RS01260 (GJS33_01260) - 244549..244995 (+) 447 WP_037580461.1 dUTP diphosphatase -
  GJS33_RS01265 (GJS33_01265) radA 245061..246422 (+) 1362 WP_154298678.1 DNA repair protein RadA Machinery gene
  GJS33_RS01270 (GJS33_01270) - 246582..246860 (-) 279 WP_154298679.1 hypothetical protein -
  GJS33_RS01275 (GJS33_01275) - 247244..247750 (+) 507 WP_154298680.1 beta-class carbonic anhydrase -
  GJS33_RS01280 (GJS33_01280) - 247878..248591 (+) 714 WP_037580456.1 TIGR00266 family protein -
  GJS33_RS01285 (GJS33_01285) gltX 249352..250797 (+) 1446 WP_154298681.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49330.75 Da        Isoelectric Point: 7.0274

>NTDB_id=400508 GJS33_RS01265 WP_154298678.1 245061..246422(+) (radA) [Streptococcus equi subsp. zooepidemicus strain AZ-45470]
MAKKKARFICGECGYQSPKYLGRCPNCSAWSSFVEEAEVKDVKNARISLTGEKSKPIKLKHVNGVRYQRIQTEMNEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLADKGTVLYVSGEESAEQIKMRSDRLGQTDNDFYLYAETNMQAIRAEIE
AIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELLQLAKSNHIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFDMQSGGLVEVLNPSQVFLEERLDGATGSAVVVTMEGSRPILAEVQALVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEIGLTGDIR
RVTRIEQRINEAAKLGFTKLYAPKSSLQGIDLPKGIEVVGVTTVGEVLKAVFT

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=400508 GJS33_RS01265 WP_154298678.1 245061..246422(+) (radA) [Streptococcus equi subsp. zooepidemicus strain AZ-45470]
ATAGCTAAGAAAAAGGCAAGGTTTATCTGTGGGGAATGTGGCTATCAGTCACCCAAATATCTGGGGCGGTGCCCTAATTG
CTCTGCCTGGTCTTCTTTTGTAGAGGAGGCTGAGGTCAAGGATGTCAAAAATGCCCGTATTAGCCTGACTGGAGAAAAAA
GTAAGCCCATCAAGCTAAAGCATGTCAATGGCGTTCGCTACCAGCGTATCCAGACTGAGATGAATGAGTTCAATCGTGTG
CTGGGCGGAGGTGTTGTGCCGGGGAGCTTGGTGTTGATTGGTGGTGATCCTGGTATTGGTAAGTCAACATTGCTTTTGCA
GGTATCTATCCAGCTTGCAGATAAGGGAACTGTTTTATATGTCTCTGGAGAGGAATCGGCAGAGCAGATCAAGATGCGCA
GTGACCGCTTGGGACAGACCGACAATGACTTTTACCTCTATGCAGAGACCAATATGCAAGCTATTCGGGCAGAGATTGAA
GCCATTCAGCCGGATTTTTTGATTATTGATTCTATTCAAACGATCATGAGTCCGGAGATTTCGGGTGTTCAGGGCTCGGT
CAGTCAGGTGAGAGAGGTTACTGCTGAGCTGCTCCAGCTAGCTAAGTCTAATCATATTGCAACCTTTATCGTAGGACATG
TCACCAAGGAGGGCACCCTAGCAGGGCCACGTATGCTGGAGCATATGGTTGATACGGTGCTTTATTTTGAAGGGGAAAGA
CACCATACCTTTCGAATCCTGCGAGCTGTTAAAAATCGTTTTGGCTCAACCAATGAGATTGGTATTTTTGACATGCAATC
AGGTGGCTTAGTGGAGGTTCTCAACCCCAGTCAGGTTTTCTTAGAGGAGCGTCTGGACGGCGCAACAGGCTCGGCTGTTG
TCGTTACAATGGAGGGCAGTAGGCCAATTTTAGCTGAGGTGCAGGCCTTGGTGACACCGACTGTTTTTGGCAATGCTAGA
CGAACGACAACTGGGCTGGACTTTAATCGCGTCAGTCTGATTATGGCTGTCTTGGAAAAGCGATGTGGGCTGCTGCTACA
AAATCAAGATGCCTACCTCAAGTCAGCAGGCGGTGTGAAGCTAGATGAGCCTGCTATTGACTTGGCAGTTGCTGTGGCCA
TTGCCTCTAGCTACAAGGAAAAACCAACCAACCCTCAGGAGGCTTTTTTAGGAGAGATTGGCTTGACTGGTGATATTCGG
CGTGTGACCCGTATTGAGCAGCGGATTAATGAAGCCGCTAAGCTTGGCTTTACCAAGCTTTACGCTCCGAAAAGCTCATT
GCAGGGGATTGATCTGCCAAAAGGGATTGAGGTTGTTGGTGTGACGACAGTAGGAGAGGTCTTAAAGGCTGTCTTTACTT
AG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(60-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

84.735

99.779

0.845
  radA Streptococcus pneumoniae D39

84.735

99.779

0.845
  radA Streptococcus pneumoniae R6

84.735

99.779

0.845
  radA Streptococcus pneumoniae TIGR4

84.735

99.779

0.845
  radA Streptococcus mitis NCTC 12261

84.292

99.779

0.841
  radA Streptococcus mitis SK321

84.292

99.779

0.841
  radA Bacillus subtilis subsp. subtilis str. 168

61.148

100

0.611

Multiple sequence alignment