Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0J   Type   Regulator
Locus tag   GJS32_RS10415 Genome accession   NZ_CP046040
Coordinates   2188149..2188922 (+) Length   257 a.a.
NCBI ID   WP_014623697.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain OH-71905     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2183149..2193922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJS32_RS10405 (GJS32_10405) rlmH 2186117..2186596 (-) 480 WP_012678751.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  GJS32_RS10410 (GJS32_10410) htrA 2186806..2188029 (+) 1224 WP_014623696.1 S1C family serine protease Regulator
  GJS32_RS10415 (GJS32_10415) spo0J 2188149..2188922 (+) 774 WP_014623697.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 257 a.a.        Molecular weight: 29174.83 Da        Isoelectric Point: 9.7975

>NTDB_id=400496 GJS32_RS10415 WP_014623697.1 2188149..2188922(+) (spo0J) [Streptococcus equi subsp. zooepidemicus strain OH-71905]
MTEILMHIPIEDIVTNPYQPRLQFNQKELEELAHSIQANGLIQPIIVRKSDVFGYELVAGERRFKAAKLAGLQKIPAIVK
EISTLESMQQAIVENLQRSNLNAIEEAKAYQLLIDKNKMTHEDIATYMGKSRPYISNTIRLLQLPDVIRQAIEDGTISAG
HARALLSLSTPKEQELYFHNILDQGLSVRQIEQLVKTKHPPKKRNKHKTIFVKSLEKELSKSLGLPVALSLQKNDSGQLQ
LSFSNQEELNRIINKLL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=400496 GJS32_RS10415 WP_014623697.1 2188149..2188922(+) (spo0J) [Streptococcus equi subsp. zooepidemicus strain OH-71905]
ATGACAGAAATCCTAATGCACATTCCTATCGAGGATATTGTGACAAATCCTTATCAACCACGTCTTCAATTTAATCAAAA
AGAGCTTGAGGAGCTGGCACATTCCATTCAGGCTAATGGTTTGATTCAACCAATCATTGTCAGAAAATCTGATGTATTTG
GCTATGAATTAGTCGCTGGAGAACGACGCTTTAAAGCAGCCAAGCTGGCAGGACTTCAAAAGATTCCAGCAATTGTTAAG
GAAATCTCTACTCTTGAGAGCATGCAGCAGGCCATCGTAGAAAACCTACAGCGCTCAAATTTAAATGCTATTGAAGAGGC
TAAGGCCTATCAATTACTTATTGATAAAAATAAGATGACCCATGAGGACATCGCGACATACATGGGAAAATCACGCCCTT
ATATCAGCAACACCATCAGACTGCTGCAATTACCAGACGTTATTAGACAAGCGATTGAGGACGGTACCATTAGCGCCGGC
CATGCAAGAGCTTTATTATCCTTGTCAACACCAAAAGAGCAGGAGCTTTATTTTCACAACATTCTGGATCAAGGCTTAAG
CGTTAGGCAAATCGAACAGCTGGTAAAGACTAAGCATCCCCCAAAAAAAAGAAACAAACATAAAACCATTTTTGTGAAGT
CTTTAGAAAAAGAGCTCTCAAAATCATTAGGATTACCTGTGGCATTGTCTCTCCAAAAAAATGACAGTGGGCAGCTGCAA
CTGTCATTTTCAAACCAAGAAGAATTGAACAGAATTATCAACAAGTTGCTTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

62.109

99.611

0.619


Multiple sequence alignment