Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   HR116_RS28050 Genome accession   NZ_CP054591
Coordinates   6069345..6069710 (-) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain CDN118     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6064345..6074710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR116_RS28035 pilK 6065689..6066564 (-) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -
  HR116_RS28040 pilJ 6066625..6068673 (-) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  HR116_RS28045 - 6068758..6069294 (-) 537 WP_003084590.1 chemotaxis protein CheW -
  HR116_RS28050 pilH 6069345..6069710 (-) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  HR116_RS28055 pilG 6069757..6070164 (-) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  HR116_RS28060 gshB 6070419..6071372 (+) 954 WP_003100943.1 glutathione synthase -
  HR116_RS28065 - 6071519..6072412 (+) 894 WP_003084580.1 TonB family protein -
  HR116_RS28070 - 6072461..6073030 (+) 570 WP_003100947.1 YqgE/AlgH family protein -
  HR116_RS28075 ruvX 6073030..6073464 (+) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  HR116_RS28080 pyrR 6073576..6074088 (+) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=400413 HR116_RS28050 WP_003084587.1 6069345..6069710(-) (pilH) [Pseudomonas aeruginosa strain CDN118]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=400413 HR116_RS28050 WP_003084587.1 6069345..6069710(-) (pilH) [Pseudomonas aeruginosa strain CDN118]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364

Multiple sequence alignment