Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   HR116_RS23285 Genome accession   NZ_CP054591
Coordinates   5049296..5050300 (-) Length   334 a.a.
NCBI ID   WP_003113871.1    Uniprot ID   A0A0H2ZEU1
Organism   Pseudomonas aeruginosa strain CDN118     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5044296..5055300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR116_RS23270 - 5044779..5045786 (+) 1008 WP_003163274.1 TolB family protein -
  HR116_RS23275 mutS 5045912..5048479 (+) 2568 WP_003113873.1 DNA mismatch repair protein MutS -
  HR116_RS23280 fdxA 5048546..5048869 (+) 324 WP_003092272.1 ferredoxin FdxA -
  HR116_RS23285 rpoS 5049296..5050300 (-) 1005 WP_003113871.1 RNA polymerase sigma factor RpoS Regulator
  HR116_RS23290 - 5050405..5051298 (-) 894 WP_031639387.1 peptidoglycan DD-metalloendopeptidase family protein -
  HR116_RS23295 - 5051344..5051979 (-) 636 WP_078451413.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  HR116_RS23300 surE 5052012..5052761 (-) 750 WP_003092341.1 5'/3'-nucleotidase SurE -
  HR116_RS23305 truD 5052749..5053816 (-) 1068 WP_003163270.1 tRNA pseudouridine(13) synthase TruD -
  HR116_RS23310 ispF 5053813..5054286 (-) 474 WP_003092346.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  HR116_RS23315 fghA 5054357..5055208 (-) 852 WP_003163269.1 S-formylglutathione hydrolase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 38235.38 Da        Isoelectric Point: 5.0478

>NTDB_id=400401 HR116_RS23285 WP_003113871.1 5049296..5050300(-) (rpoS) [Pseudomonas aeruginosa strain CDN118]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=400401 HR116_RS23285 WP_003113871.1 5049296..5050300(-) (rpoS) [Pseudomonas aeruginosa strain CDN118]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(179-253)

Sigma-70 region 2 (Sigma70_r2)

(99-168)

Sigma-70, region 4 (Sigma70_r4)

(267-320)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(61-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZEU1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

66.463

98.204

0.653