Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   POR16_RS03910 Genome accession   NZ_CP046035
Coordinates   883351..884718 (+) Length   455 a.a.
NCBI ID   WP_003381736.1    Uniprot ID   Q0EDX1
Organism   Pseudomonas coronafaciens pv. oryzae str. 1_6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 878351..889718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  POR16_RS03875 (POR16_03875) cydB 878647..879654 (+) 1008 WP_005894303.1 cytochrome d ubiquinol oxidase subunit II -
  POR16_RS03880 (POR16_03880) - 879676..879843 (+) 168 WP_005894301.1 DUF2474 domain-containing protein -
  POR16_RS03885 (POR16_03885) - 879938..881062 (-) 1125 WP_005894300.1 methyltransferase -
  POR16_RS03890 (POR16_03890) - 881191..881424 (-) 234 WP_005894298.1 response regulator transcription factor -
  POR16_RS03895 (POR16_03895) - 881761..882537 (+) 777 WP_005894297.1 ferredoxin--NADP reductase -
  POR16_RS03900 (POR16_03900) mscL 882710..883156 (-) 447 WP_005894296.1 large-conductance mechanosensitive channel protein MscL -
  POR16_RS03905 (POR16_03905) - 883170..883352 (-) 183 WP_144106539.1 hypothetical protein -
  POR16_RS03910 (POR16_03910) radA 883351..884718 (+) 1368 WP_003381736.1 DNA repair protein RadA Machinery gene
  POR16_RS03915 (POR16_03915) - 884732..885106 (-) 375 WP_005894295.1 PilZ domain-containing protein -
  POR16_RS03920 (POR16_03920) - 885391..887466 (+) 2076 WP_005894294.1 carbon starvation CstA family protein -
  POR16_RS03925 (POR16_03925) - 887494..887691 (+) 198 WP_002555232.1 YbdD/YjiX family protein -
  POR16_RS03930 (POR16_03930) yjiA 887787..888764 (+) 978 WP_005894293.1 GTPase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48839.40 Da        Isoelectric Point: 7.1315

>NTDB_id=400377 POR16_RS03910 WP_003381736.1 883351..884718(+) (radA) [Pseudomonas coronafaciens pv. oryzae str. 1_6]
MAKAKRLYGCTECGATFPKWAGQCADCGAWNTLVETMIESGAAAPPSGRTGWTGSQAQIRTLAEVSVEEIPRFSTNSAEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAQRMPALYVTGEESQQQVAMRARRLGLPQDKLRVMTETCIETIIA
TAKVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHMS
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=400377 POR16_RS03910 WP_003381736.1 883351..884718(+) (radA) [Pseudomonas coronafaciens pv. oryzae str. 1_6]
ATGGCCAAGGCCAAACGCTTGTACGGCTGCACCGAGTGTGGCGCGACGTTTCCCAAGTGGGCGGGCCAGTGCGCTGATTG
CGGCGCCTGGAACACACTGGTCGAAACCATGATTGAGAGTGGTGCCGCTGCGCCCCCCAGTGGACGCACGGGCTGGACCG
GTTCGCAGGCGCAGATCAGAACCCTGGCGGAAGTCAGCGTCGAAGAGATCCCGCGTTTCTCCACCAACTCCGCCGAGCTG
GATCGCGTGCTCGGTGGCGGTCTGGTAGACGGCTCGGTGGTGTTGATCGGCGGTGATCCTGGCATCGGTAAATCAACCAT
TCTGCTTCAGACACTGTGCAACATTGCGCAACGCATGCCTGCCCTGTATGTCACTGGTGAGGAATCCCAACAGCAAGTGG
CCATGCGCGCCCGCCGTCTGGGCCTGCCGCAGGACAAACTGCGCGTCATGACCGAAACCTGCATCGAGACGATCATTGCC
ACAGCCAAGGTCGAAAAGCCGAAAGTGATGGTGATCGACTCGATCCAGACGATCTTTACCGAACAGTTGCAATCCGCACC
GGGTGGCGTATCGCAGGTTCGTGAAAGCGCTGCCTTGCTGGTGCGCTACGCCAAACAAAGCGGCACCGCGATCTTTCTGG
TGGGTCACGTCACCAAGGAAGGCGCGCTGGCCGGTCCACGCGTGCTGGAGCACATGGTCGACACCGTGTTGTATTTCGAA
GGCGAGTCGGACGGCCGTCTGCGCCTGTTGCGGGCCGTGAAGAATCGCTTCGGTGCCGTGAACGAGCTGGGCGTGTTCGG
CATGACCGACAAGGGCTTGAAGGAAGTCTCCAATCCGTCGGCGATTTTCCTGACCCGTGCTCAGGAAGAAGTACCGGGCA
GCGTGGTCATGGCTACGTGGGAAGGTACGCGACCCATGCTGGTGGAAGTCCAGGCACTGGTGGATGACAGCCACATGTCC
AATCCGCGCCGGGTGACACTGGGGCTCGATCAAAACCGTCTGGCGATGCTATTGGCCGTATTGCACCGGCATGGCGGCAT
TCCGACCCACGATCAGGACGTGTTCCTCAACGTGGTGGGGGGCGTGAAGGTGCTCGAGACCGCATCAGACCTGGCCTTGA
TGGCCGCGGTCATGTCCAGCCTGCGCAATAGGCCTCTGCCGCATGACCTGCTGGTGTTTGGCGAAGTGGGGTTGTCGGGT
GAGGTCAGGCCCGTGCCCAGTGGTCAGGAGCGCCTCAAGGAGGCCGCCAAGCACGGTTTCAAACGGGCCATCGTGCCGAA
AGGCAATGCGCCGAAAGAAGCACCTCCCGGCTTGCAAATCATTGCTGTCACGCGCCTGGAGCAGGCTTTGGATGCGCTGT
TCGAGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(73-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0EDX1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.123

100

0.492
  radA Streptococcus pneumoniae Rx1

46.739

100

0.473
  radA Streptococcus pneumoniae R6

46.739

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.739

100

0.473
  radA Streptococcus pneumoniae D39

46.739

100

0.473
  radA Streptococcus mitis SK321

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.711

100

0.468

Multiple sequence alignment