Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   POR16_RS02130 Genome accession   NZ_CP046035
Coordinates   442824..443234 (+) Length   136 a.a.
NCBI ID   WP_005888348.1    Uniprot ID   -
Organism   Pseudomonas coronafaciens pv. oryzae str. 1_6     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 437824..448234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  POR16_RS02100 (POR16_02100) - 437844..438848 (-) 1005 WP_005888337.1 aspartate carbamoyltransferase catalytic subunit -
  POR16_RS02105 (POR16_02105) pyrR 438861..439373 (-) 513 WP_005888339.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  POR16_RS02110 (POR16_02110) ruvX 439472..439912 (-) 441 WP_005888341.1 Holliday junction resolvase RuvX -
  POR16_RS02115 (POR16_02115) - 439912..440484 (-) 573 WP_005888343.1 YqgE/AlgH family protein -
  POR16_RS02120 (POR16_02120) - 440561..441463 (-) 903 WP_024668620.1 energy transducer TonB -
  POR16_RS02125 (POR16_02125) gshB 441619..442578 (-) 960 WP_005888347.1 glutathione synthase -
  POR16_RS02130 (POR16_02130) pilG 442824..443234 (+) 411 WP_005888348.1 twitching motility response regulator PilG Regulator
  POR16_RS02135 (POR16_02135) pilH 443281..443646 (+) 366 WP_005888349.1 twitching motility response regulator PilH -
  POR16_RS02140 (POR16_02140) - 443661..444200 (+) 540 WP_005888350.1 chemotaxis protein CheW -
  POR16_RS02145 (POR16_02145) - 444389..446431 (+) 2043 WP_005888352.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14979.45 Da        Isoelectric Point: 8.5340

>NTDB_id=400376 POR16_RS02130 WP_005888348.1 442824..443234(+) (pilG) [Pseudomonas coronafaciens pv. oryzae str. 1_6]
MEQHASALKVMVIDDSKTIRRTAETLLKNAGCEVITAIDGFDALAKIADNHPRIIFVDIMMPRLDGYQTCALIKNNRAFK
STPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLNAIKAHVPGFVAAEHHLS

Nucleotide


Download         Length: 411 bp        

>NTDB_id=400376 POR16_RS02130 WP_005888348.1 442824..443234(+) (pilG) [Pseudomonas coronafaciens pv. oryzae str. 1_6]
ATGGAACAACACGCCTCCGCCTTGAAAGTCATGGTCATCGATGACTCGAAGACTATCCGCCGCACCGCCGAAACGCTGCT
TAAAAACGCTGGCTGTGAAGTCATCACGGCGATAGACGGTTTCGACGCACTGGCCAAAATTGCCGATAACCACCCGCGCA
TCATATTCGTCGATATCATGATGCCGCGCCTGGACGGTTATCAGACCTGCGCACTGATCAAGAACAACCGCGCATTCAAA
TCGACGCCGGTCATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGGCGGATCGTCGGTTCCGACCAATT
TCTGACAAAGCCTTTCAGCAAGGAAGAACTGCTCAACGCAATCAAGGCCCATGTGCCCGGCTTCGTTGCCGCAGAACACC
ATCTATCGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76

91.912

0.699

Multiple sequence alignment