Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GJU84_RS10600 Genome accession   NZ_CP046028
Coordinates   2148021..2149394 (-) Length   457 a.a.
NCBI ID   WP_037572997.1    Uniprot ID   A0AAE5T2R7
Organism   Staphylococcus chromogenes strain 1401     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2143021..2154394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJU84_RS10575 (GJU84_10500) cysE 2143273..2143911 (-) 639 WP_258026740.1 serine O-acetyltransferase -
  GJU84_RS10580 (GJU84_10505) gltX 2144239..2145693 (-) 1455 WP_145401554.1 glutamate--tRNA ligase -
  GJU84_RS10585 (GJU84_10510) ispF 2145770..2146249 (-) 480 WP_145401556.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  GJU84_RS10590 (GJU84_10515) ispD 2146242..2146940 (-) 699 WP_145401558.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  GJU84_RS10595 (GJU84_10520) - 2146940..2148004 (-) 1065 WP_103158777.1 PIN/TRAM domain-containing protein -
  GJU84_RS10600 (GJU84_10525) radA 2148021..2149394 (-) 1374 WP_037572997.1 DNA repair protein RadA Machinery gene
  GJU84_RS10605 (GJU84_10530) - 2149521..2152007 (-) 2487 WP_165885894.1 ATP-dependent Clp protease ATP-binding subunit -
  GJU84_RS10610 (GJU84_10535) - 2152020..2153024 (-) 1005 WP_037573001.1 protein arginine kinase -
  GJU84_RS10615 (GJU84_10540) - 2153008..2153427 (-) 420 Protein_2067 UvrB/UvrC motif-containing protein -
  GJU84_RS10620 (GJU84_10545) - 2153559..2154020 (-) 462 WP_105985693.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50287.91 Da        Isoelectric Point: 7.9984

>NTDB_id=400367 GJU84_RS10600 WP_037572997.1 2148021..2149394(-) (radA) [Staphylococcus chromogenes strain 1401]
MAKKKVIFECTACGYQSPKWMGKCPNCGAWNSMEESLEQKTAHPKHGVRTQKTTQSKIQTLNEVKNEKTPRILTNSQEFN
RVLGGGIVQGSLVLIGGDPGIGKSTLLLQMCAALSKEKKVLYITGEESLNQTKLRADRLDEDASALNVFAETDLEVIHEA
VKKVQPELIVVDSIQTIYHPEISSAPGSVSQVRESTQSLMHIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEG
DEHHAYRILRAVKNRFGSTNEMGIFEMKQAGLKSVPNPSEMFLEERSTNVPGSTIVATMEGTRPLLIEVQALVTPTTFNN
PRRMATGIDHNRLSLLMAVLEKKEGYLLQQQDAYIKVAGGVKLSEPAVDLSIIIATASSFKDQAVDGLDCFIGEVGLTGE
VRRVSRIEQRVQEAAKLGFKRVIIPKTNIGGWTFPENIEVIGVTSTNEALKYALKSK

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=400367 GJU84_RS10600 WP_037572997.1 2148021..2149394(-) (radA) [Staphylococcus chromogenes strain 1401]
GTGGCCAAGAAAAAAGTCATATTTGAATGTACTGCATGTGGTTATCAATCTCCGAAGTGGATGGGGAAATGTCCTAACTG
TGGCGCATGGAATTCCATGGAAGAATCGTTAGAACAAAAAACAGCACACCCAAAACACGGGGTACGTACACAAAAGACGA
CACAATCAAAAATTCAAACGCTCAACGAAGTAAAGAATGAAAAAACACCACGTATTTTAACGAATAGCCAAGAGTTTAAC
CGTGTTTTAGGTGGCGGTATTGTCCAAGGTTCTCTTGTTTTAATCGGAGGAGACCCAGGGATAGGAAAGTCAACATTGTT
ACTTCAAATGTGCGCTGCGTTATCAAAAGAAAAGAAAGTGCTATACATTACTGGGGAAGAATCATTAAACCAAACTAAAT
TACGTGCCGATCGTTTAGATGAAGATGCTAGTGCTTTAAATGTATTTGCAGAAACGGATTTAGAGGTGATTCATGAAGCA
GTAAAAAAAGTACAACCCGAGCTCATCGTTGTAGACTCTATTCAAACGATTTATCACCCAGAAATTAGTTCTGCACCTGG
TTCTGTGTCTCAGGTACGTGAAAGTACACAAAGTTTAATGCATATTGCCAAACAGATGAATATTGCCACGTTTATCGTGG
GGCACGTGACAAAAGAAGGACAAATTGCGGGTCCTAGATTATTAGAACATATGGTGGATACCGTGCTTTATTTTGAAGGT
GATGAGCATCATGCTTATCGTATTTTACGTGCGGTGAAAAACCGCTTTGGTTCAACGAATGAAATGGGCATTTTTGAAAT
GAAACAAGCAGGTCTTAAAAGTGTCCCGAATCCTTCTGAAATGTTTTTAGAAGAGCGATCAACGAATGTTCCGGGGTCGA
CGATTGTCGCCACTATGGAAGGGACACGTCCGCTATTAATAGAAGTCCAAGCCCTCGTCACACCGACCACATTTAATAAT
CCTAGACGAATGGCGACGGGGATTGATCACAACCGTTTAAGTCTGTTGATGGCCGTATTAGAGAAAAAAGAGGGGTATCT
GTTACAACAACAAGATGCCTACATCAAAGTGGCAGGTGGTGTCAAATTAAGTGAACCTGCTGTGGATTTAAGCATCATTA
TTGCGACAGCCTCAAGCTTTAAAGACCAAGCCGTTGATGGGTTAGACTGTTTTATTGGTGAAGTTGGTTTGACAGGTGAG
GTACGCCGTGTCTCTCGAATTGAGCAAAGAGTTCAAGAAGCAGCAAAATTAGGGTTTAAACGTGTGATTATACCGAAAAC
GAATATTGGGGGATGGACCTTCCCAGAAAACATTGAAGTTATCGGTGTGACCTCAACAAATGAAGCATTAAAATATGCTT
TGAAATCTAAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(70-220)

Subunit ChlI of Mg-chelatase (ChlI)

(345-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.009

99.781

0.659
  radA Streptococcus pneumoniae Rx1

59.867

98.687

0.591
  radA Streptococcus pneumoniae D39

59.867

98.687

0.591
  radA Streptococcus pneumoniae R6

59.867

98.687

0.591
  radA Streptococcus pneumoniae TIGR4

59.867

98.687

0.591
  radA Streptococcus mitis NCTC 12261

59.867

98.687

0.591
  radA Streptococcus mitis SK321

59.867

98.687

0.591

Multiple sequence alignment