Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   GJU84_RS03785 Genome accession   NZ_CP046028
Coordinates   813089..813811 (-) Length   240 a.a.
NCBI ID   WP_037575675.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain 1401     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 808089..818811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJU84_RS03765 (GJU84_03750) - 808320..808967 (+) 648 WP_037575663.1 redox-sensing transcriptional repressor Rex -
  GJU84_RS03770 (GJU84_03755) - 809434..810516 (+) 1083 WP_165885558.1 YeeE/YedE family protein -
  GJU84_RS03775 (GJU84_03760) - 810538..810762 (+) 225 WP_037575670.1 sulfurtransferase TusA family protein -
  GJU84_RS03780 (GJU84_03765) - 811109..812593 (+) 1485 WP_165885559.1 sucrose-6-phosphate hydrolase -
  GJU84_RS03785 (GJU84_03770) agrA 813089..813811 (-) 723 WP_037575675.1 LytTR family DNA-binding domain-containing protein Regulator
  GJU84_RS12380 - 813826..814620 (-) 795 WP_228518221.1 GHKL domain-containing protein -
  GJU84_RS03795 (GJU84_03780) - 815156..815290 (-) 135 WP_105986645.1 cyclic lactone autoinducer peptide -
  GJU84_RS03800 (GJU84_03785) - 815293..815856 (-) 564 WP_037575678.1 accessory gene regulator AgrB -
  GJU84_RS03805 (GJU84_03790) - 816504..817301 (-) 798 WP_107364120.1 carbon-nitrogen family hydrolase -
  GJU84_RS12485 (GJU84_03795) - 817481..818656 (+) 1176 WP_165885560.1 SdrH family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 28255.30 Da        Isoelectric Point: 5.2218

>NTDB_id=400345 GJU84_RS03785 WP_037575675.1 813089..813811(-) (agrA) [Staphylococcus chromogenes strain 1401]
MKILICEDDPKQRERMESIIRNYIMIEEKPMEIEISTSDPYALLEASKNMNDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKLAAMDFIFKDDVDELRTRVIDCLETALKRLDLLTKDNTVETMELKQGSNSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLRELAQIDDRFFRCHNSFVLNRHNITHVDAKDRIVYFKNDEFCYVSVRNIKKIKN

Nucleotide


Download         Length: 723 bp        

>NTDB_id=400345 GJU84_RS03785 WP_037575675.1 813089..813811(-) (agrA) [Staphylococcus chromogenes strain 1401]
TTGAAAATTTTAATTTGTGAAGATGATCCTAAACAAAGAGAACGAATGGAATCCATCATTCGAAATTATATTATGATTGA
AGAAAAACCTATGGAAATTGAAATTTCGACGAGTGATCCCTATGCTTTGCTCGAAGCTTCTAAAAACATGAATGATATCG
GTTGTTATTTTTTAGATATTCAACTCGAGTCTGATATTAATGGGATTAAGTTAGGAAGCGAAATTAGAAAACATGATCCT
GTTGGTAATATTATTTTCGTTACAAGTCATAGTGAATTAACCTATCTAACATTTGTATACAAGTTGGCGGCCATGGATTT
TATTTTTAAAGATGACGTCGATGAGTTACGCACGCGAGTCATTGATTGTCTTGAAACAGCTTTAAAACGTCTTGATTTGC
TTACGAAAGATAATACGGTTGAAACAATGGAATTAAAACAAGGGAGCAATTCTGTTTATGTGAATTACGACGATGTTATG
TTTTTTGAATCCTCTCCAAAGTCACATCGTCTTATTGCACATTTAGATAATCGTCAAATTGAATTTTATGGGAATTTAAG
AGAATTAGCACAAATCGATGATCGTTTTTTCCGATGTCATAATAGTTTTGTCTTAAATCGCCACAATATCACGCATGTGG
ATGCAAAAGATCGAATTGTCTATTTTAAAAATGATGAGTTTTGCTATGTCTCTGTAAGAAACATTAAGAAAATCAAAAAT
TAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-239)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

81.933

99.167

0.813

Multiple sequence alignment