Detailed information NTG0400341

Bioinformatically predicted

Overview

• Name: ccrA
• Type: Machinery gene
• Locus tag: GJU84_RS00255
• Genome accession: NZ_CP046028
• Coordinates: 50276..51613 (-)
• Length: 445 a.a.
• NCBI ID: WP_165885318.1
• Uniprot ID: -
• Organism: Staphylococcus chromogenes strain 1401
• Function: promote SCCmec transfer (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
SCCmec	48617..51613	50276..51613	within	0

Gene organization within MGE regions

Location: 48617..51613

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GJU84_RS00250 (GJU84_00250)	ccrB	48617..50242 (-)	1626	WP_165622242.1	recombinase family protein	Machinery gene
GJU84_RS00255 (GJU84_00255)	ccrA	50276..51613 (-)	1338	WP_165885318.1	recombinase family protein	Machinery gene

Sequence

Protein

• Length: 445 a.a.
• Molecular weight: 52140.91 Da
• Isoelectric Point: 10.0307

>NTDB_id=400341 GJU84_RS00255 WP_165885318.1 50276..51613(-) (ccrA) [Staphylococcus chromogenes strain 1401]
MKQAIGYLRQSTTKQQSLAAQKQTIKVLAEKHNIQHITFYSDKQSGRTDKRNGYQQITELIQQGQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYH
NGTFTIDTVKAPTVKAVFNYYLQGYGYKKIAQYLEADDNFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI
YEEAQVIRTQKQVKRKPSENQLKQKIKCPYCHSTLTNMTVRKPNHSLRYYVCPQNMNNARFVCEFKGINAQELETSVLAT
CQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLIEKLAQGKIDAETFREQTQSLHQQSKPISSISAYQIRKAFQ
NIIQQRFTLNMLYPYIDEINISKNKRLAAIYFKNEPLNIVKQTMK

Nucleotide

• Length: 1338 bp

>NTDB_id=400341 GJU84_RS00255 WP_165885318.1 50276..51613(-) (ccrA) [Staphylococcus chromogenes strain 1401]
ATGAAACAAGCAATTGGTTACTTACGACAGAGCACTACAAAGCAACAATCTTTAGCAGCACAAAAACAAACCATCAAGGT
ATTAGCCGAAAAACATAATATTCAACACATTACCTTTTATAGCGATAAACAATCAGGACGTACTGATAAGCGGAATGGTT
ATCAACAAATTACTGAACTAATTCAACAGGGACAATGTGACGTATTATGTTGTTATAGATTAAACCGACTTCATCGCAAT
CTTAAAAATGCATTAAAACTCATGAAATTGTGTCAAAAATACCATGTCCATATCTTAAGCGTTCATGATGGCTATTTTGA
TATGGATAAAGCATTCGATCGGCTCAAACTCAATATTTTCATCAGCTTGGCCGAACTAGAATCTGATAATATAGGCGAAC
AAGTCAAAAATGGAATCAAAGAAAAAGCTAAACAAGGTAAAATGATTACAACACATGCACCCTTTGGGTATCACTATCAT
AATGGTACTTTCACGATAGACACAGTAAAAGCACCAACAGTAAAAGCTGTGTTCAATTATTACCTTCAAGGTTATGGTTA
TAAAAAAATTGCGCAATACTTAGAAGCTGATGATAACTTCATTAATCGTAAGCCCTATCAAGTGCGTAATATTATCCTTA
ACCCTAATTACTGTGGCCGTGTTATCAATCAATACGGACAATATGAAAACATGTTCCCAGCTATTGTCAGTACAACGATA
TACGAAGAAGCTCAAGTTATCCGAACTCAGAAACAAGTCAAACGTAAGCCGTCAGAAAATCAACTCAAACAAAAAATCAA
ATGTCCCTATTGCCATTCGACACTCACAAACATGACCGTCCGAAAACCAAATCATTCATTGCGTTACTATGTCTGTCCGC
AAAATATGAATAACGCTCGCTTTGTTTGTGAATTTAAAGGAATCAACGCACAAGAATTAGAAACAAGTGTTTTAGCGACT
TGTCAGGACTTCTTTCAAAATCAACAGCTCTATTCAAAAATAAACCATACTATTCAACAACGACTCAAAAGACAAAGAGA
TATAGAAACTAAAACTACACTCAATCACGAGCAGCTGATAGAAAAATTAGCCCAAGGCAAAATTGATGCAGAAACGTTCA
GAGAACAAACGCAATCATTACATCAACAATCAAAACCTATATCATCAATCAGTGCGTATCAAATTCGAAAAGCTTTCCAA
AACATCATTCAACAACGTTTCACGCTAAACATGTTGTACCCCTATATTGATGAAATTAATATTTCTAAAAATAAAAGGCT
CGCTGCCATCTATTTCAAAAACGAACCACTGAATATTGTAAAGCAGACTATGAAATGA

Domains

Predicted by InterproScan.

• Recombinase (Recombinase) (170-250)

• Recombinase zinc beta ribbon domain (Zn_ribbon_recom) (262-322)

• Resolvase, N terminal domain (Resolvase) (4-147)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ccrA	Staphylococcus aureus COL	95.506	100	0.955
ccrA	Staphylococcus aureus N315	74.607	100	0.746