Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   GJU84_RS00255 Genome accession   NZ_CP046028
Coordinates   50276..51613 (-) Length   445 a.a.
NCBI ID   WP_165885318.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain 1401     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 45276..56613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJU84_RS00225 (GJU84_00225) - 46127..46525 (+) 399 WP_165885317.1 hypothetical protein -
  GJU84_RS00230 (GJU84_00230) - 46649..46870 (-) 222 WP_165622246.1 hypothetical protein -
  GJU84_RS00235 (GJU84_00235) - 46884..47387 (-) 504 WP_165622245.1 DUF1643 domain-containing protein -
  GJU84_RS00240 (GJU84_00240) - 47402..47713 (-) 312 WP_165622244.1 DUF960 family protein -
  GJU84_RS00245 (GJU84_00245) - 47800..48150 (-) 351 WP_165622243.1 SAUGI family uracil-DNA glycosylase inhibitor -
  GJU84_RS00250 (GJU84_00250) ccrB 48617..50242 (-) 1626 WP_165622242.1 recombinase family protein Machinery gene
  GJU84_RS00255 (GJU84_00255) ccrA 50276..51613 (-) 1338 WP_165885318.1 recombinase family protein Machinery gene
  GJU84_RS00260 (GJU84_00260) - 51791..52048 (-) 258 WP_058332293.1 hypothetical protein -
  GJU84_RS00265 (GJU84_00265) - 52111..53901 (-) 1791 WP_165885319.1 DUF927 domain-containing protein -
  GJU84_RS00270 (GJU84_00270) - 53901..54194 (-) 294 WP_165885320.1 DUF1413 domain-containing protein -
  GJU84_RS00275 (GJU84_00275) - 54367..55878 (-) 1512 WP_165885321.1 hypothetical protein -
  GJU84_RS00280 (GJU84_00280) - 55940..56605 (-) 666 WP_031912433.1 Cthe_2314 family HEPN domain-containing protein -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 52140.91 Da        Isoelectric Point: 10.0307

>NTDB_id=400341 GJU84_RS00255 WP_165885318.1 50276..51613(-) (ccrA) [Staphylococcus chromogenes strain 1401]
MKQAIGYLRQSTTKQQSLAAQKQTIKVLAEKHNIQHITFYSDKQSGRTDKRNGYQQITELIQQGQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYH
NGTFTIDTVKAPTVKAVFNYYLQGYGYKKIAQYLEADDNFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI
YEEAQVIRTQKQVKRKPSENQLKQKIKCPYCHSTLTNMTVRKPNHSLRYYVCPQNMNNARFVCEFKGINAQELETSVLAT
CQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLIEKLAQGKIDAETFREQTQSLHQQSKPISSISAYQIRKAFQ
NIIQQRFTLNMLYPYIDEINISKNKRLAAIYFKNEPLNIVKQTMK

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=400341 GJU84_RS00255 WP_165885318.1 50276..51613(-) (ccrA) [Staphylococcus chromogenes strain 1401]
ATGAAACAAGCAATTGGTTACTTACGACAGAGCACTACAAAGCAACAATCTTTAGCAGCACAAAAACAAACCATCAAGGT
ATTAGCCGAAAAACATAATATTCAACACATTACCTTTTATAGCGATAAACAATCAGGACGTACTGATAAGCGGAATGGTT
ATCAACAAATTACTGAACTAATTCAACAGGGACAATGTGACGTATTATGTTGTTATAGATTAAACCGACTTCATCGCAAT
CTTAAAAATGCATTAAAACTCATGAAATTGTGTCAAAAATACCATGTCCATATCTTAAGCGTTCATGATGGCTATTTTGA
TATGGATAAAGCATTCGATCGGCTCAAACTCAATATTTTCATCAGCTTGGCCGAACTAGAATCTGATAATATAGGCGAAC
AAGTCAAAAATGGAATCAAAGAAAAAGCTAAACAAGGTAAAATGATTACAACACATGCACCCTTTGGGTATCACTATCAT
AATGGTACTTTCACGATAGACACAGTAAAAGCACCAACAGTAAAAGCTGTGTTCAATTATTACCTTCAAGGTTATGGTTA
TAAAAAAATTGCGCAATACTTAGAAGCTGATGATAACTTCATTAATCGTAAGCCCTATCAAGTGCGTAATATTATCCTTA
ACCCTAATTACTGTGGCCGTGTTATCAATCAATACGGACAATATGAAAACATGTTCCCAGCTATTGTCAGTACAACGATA
TACGAAGAAGCTCAAGTTATCCGAACTCAGAAACAAGTCAAACGTAAGCCGTCAGAAAATCAACTCAAACAAAAAATCAA
ATGTCCCTATTGCCATTCGACACTCACAAACATGACCGTCCGAAAACCAAATCATTCATTGCGTTACTATGTCTGTCCGC
AAAATATGAATAACGCTCGCTTTGTTTGTGAATTTAAAGGAATCAACGCACAAGAATTAGAAACAAGTGTTTTAGCGACT
TGTCAGGACTTCTTTCAAAATCAACAGCTCTATTCAAAAATAAACCATACTATTCAACAACGACTCAAAAGACAAAGAGA
TATAGAAACTAAAACTACACTCAATCACGAGCAGCTGATAGAAAAATTAGCCCAAGGCAAAATTGATGCAGAAACGTTCA
GAGAACAAACGCAATCATTACATCAACAATCAAAACCTATATCATCAATCAGTGCGTATCAAATTCGAAAAGCTTTCCAA
AACATCATTCAACAACGTTTCACGCTAAACATGTTGTACCCCTATATTGATGAAATTAATATTTCTAAAAATAAAAGGCT
CGCTGCCATCTATTTCAAAAACGAACCACTGAATATTGTAAAGCAGACTATGAAATGA

Domains

Predicted by InterProScan.

Recombinase (Recombinase)

(170-250)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)

Resolvase, N terminal domain (Resolvase)

(4-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

95.506

100

0.955
  ccrA Staphylococcus aureus N315

74.607

100

0.746

Multiple sequence alignment