Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GJV52_RS11585 Genome accession   NZ_CP046027
Coordinates   2314652..2316031 (-) Length   459 a.a.
NCBI ID   WP_095503690.1    Uniprot ID   -
Organism   Neisseria brasiliensis strain N.177.16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2309652..2321031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV52_RS11560 (GJV52_11560) - 2310214..2310990 (+) 777 WP_100563762.1 1-acylglycerol-3-phosphate O-acyltransferase -
  GJV52_RS11565 (GJV52_11565) - 2311167..2311904 (+) 738 WP_095503694.1 glutathione peroxidase -
  GJV52_RS11570 (GJV52_11570) - 2312123..2313529 (+) 1407 WP_100563754.1 dihydrolipoyl dehydrogenase -
  GJV52_RS11575 (GJV52_11575) - 2313676..2314044 (+) 369 WP_100563752.1 rhodanese-like domain-containing protein -
  GJV52_RS11580 (GJV52_11580) - 2314115..2314612 (+) 498 WP_100563750.1 DUF302 domain-containing protein -
  GJV52_RS11585 (GJV52_11585) radA 2314652..2316031 (-) 1380 WP_095503690.1 DNA repair protein RadA Machinery gene
  GJV52_RS11590 (GJV52_11590) - 2316322..2317749 (+) 1428 WP_195690043.1 acyl-CoA dehydrogenase family protein -
  GJV52_RS13345 - 2317776..2317968 (+) 193 Protein_2258 lipoprotein signal peptidase -
  GJV52_RS13125 - 2318004..2318150 (+) 147 WP_095503689.1 hypothetical protein -
  GJV52_RS11595 (GJV52_11595) - 2318332..2318532 (+) 201 WP_095503688.1 hypothetical protein -
  GJV52_RS11600 (GJV52_11600) - 2318628..2319242 (+) 615 WP_100563748.1 glutathione S-transferase family protein -
  GJV52_RS11605 (GJV52_11605) - 2319304..2319993 (+) 690 WP_095503686.1 Sir2 family NAD-dependent protein deacetylase -
  GJV52_RS11610 (GJV52_11610) - 2320038..2320697 (-) 660 WP_095503699.1 HAD family phosphatase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49430.85 Da        Isoelectric Point: 6.6041

>NTDB_id=400333 GJV52_RS11585 WP_095503690.1 2314652..2316031(-) (radA) [Neisseria brasiliensis strain N.177.16]
MAKAPKTVYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQSWAADTSSVQSLSAVTATEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQTRKVLYVSGEESAQQVALRAQRLDLPTDGVNLLAEIRMEAIQTA
LKQHEPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTETGLKGVSNPSAIFLASYRDDVPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLSMLLAVLNRHGGIACFDQDVFLNAVGGVKISEPAADLAVILAMLSSFRNRPLPEKMVSFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNVKEFPNLEIFGVGSLQEAIDVCRNAQD

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=400333 GJV52_RS11585 WP_095503690.1 2314652..2316031(-) (radA) [Neisseria brasiliensis strain N.177.16]
ATGGCAAAAGCACCGAAAACCGTTTACCAATGCACCGAATGCGGCGGCACATCGCCCAAATGGCAAGGCAAATGCCCGCA
TTGCGGCGAATGGAATACTTTGCAGGAAAGCTTGGCCGCGCCCGAACCGAAAAACGCGCGTTTCCAATCGTGGGCGGCGG
ATACTTCGAGCGTGCAATCTTTATCTGCCGTGACCGCCACCGAAGTGCCGCGCAACCCGACCGGTATGGGCGAACTCGAC
CGCGTATTGGGCGGCGGTTTGGTTGATGGCGCGGTGATTTTGTTGGGCGGCGATCCGGGCATCGGCAAATCGACCCTGTT
GTTACAAACCATCGCCAAAATGGCGCAAACGCGCAAAGTTTTGTATGTTTCAGGCGAGGAATCGGCGCAACAGGTCGCCT
TGCGCGCGCAGCGTTTGGATTTGCCGACTGATGGCGTGAATCTGTTGGCTGAAATCCGCATGGAAGCGATTCAGACGGCC
TTAAAACAACACGAACCGGAAGTGGTGGTCATCGACTCGATTCAAACCATGTATTCCGACCAAATCACGTCCGCACCCGG
CTCCGTGTCGCAAGTGCGCGAATGTGCGGCACAACTGACGCGTATGGCCAAGCAAATGGGTATCGCCATGATTTTGGTCG
GCCACGTCACCAAAGACGGCGCGATTGCCGGCCCGCGCGTGTTGGAGCATATGGTGGATACGGTACTGTATTTTGAGGGC
GACCAGCATTCCAATTACCGCATGATACGCGCGATTAAAAACCGCTTCGGTGCCGCCAATGAGTTGGGTGTATTTGCGAT
GACGGAAACAGGTTTGAAAGGTGTGTCGAACCCATCGGCGATTTTTTTAGCGAGCTATCGCGACGATGTGCCGGGTTCGT
GTGTATTGGTGACGCAGGAAGGCTCACGGCCTTTATTGGTGGAAATCCAAGCCTTGGTTGATGATGCCCACGGTTTTACA
CCCAAACGCCTCACCGTCGGCCTTGAACAAAACCGCCTGTCCATGCTGCTGGCTGTGTTAAACCGCCACGGCGGCATCGC
CTGCTTTGATCAAGATGTGTTTCTCAACGCCGTCGGCGGCGTGAAAATCAGCGAGCCCGCAGCCGACTTAGCCGTCATCC
TTGCCATGCTTTCCAGCTTCCGCAACCGCCCTTTGCCGGAAAAAATGGTCTCCTTTGGGGAAATCGGTTTGAGCGGCGAA
GTACGCCCTGTTGCCCGCGGTCAGGAACGCTTAAAAGAAGCGGAAAAACTCGGCTTCAAACGCGCCATCGTGCCGAAAGC
CAATATGCCGCGCAATGTGAAAGAATTTCCGAATTTGGAGATTTTCGGCGTGGGCAGCTTGCAGGAAGCAATTGATGTCT
GCCGTAATGCACAAGATTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(361-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(82-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50

99.782

0.499
  radA Streptococcus mitis NCTC 12261

47.672

98.257

0.468
  radA Streptococcus pneumoniae Rx1

47.45

98.257

0.466
  radA Streptococcus pneumoniae D39

47.45

98.257

0.466
  radA Streptococcus pneumoniae R6

47.45

98.257

0.466
  radA Streptococcus pneumoniae TIGR4

47.45

98.257

0.466
  radA Streptococcus mitis SK321

47.45

98.257

0.466

Multiple sequence alignment