Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   GJV52_RS07830 Genome accession   NZ_CP046027
Coordinates   1533867..1535909 (+) Length   680 a.a.
NCBI ID   WP_100564292.1    Uniprot ID   -
Organism   Neisseria brasiliensis strain N.177.16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1528867..1540909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV52_RS07805 (GJV52_07805) rng 1529424..1530917 (-) 1494 WP_095503606.1 ribonuclease G -
  GJV52_RS07810 (GJV52_07810) grxC 1531205..1531474 (+) 270 WP_100564544.1 glutaredoxin 3 -
  GJV52_RS07815 (GJV52_07815) tnpA 1531500..1531916 (-) 417 WP_095503171.1 IS200/IS605 family transposase -
  GJV52_RS07820 (GJV52_07820) - 1531961..1533103 (+) 1143 WP_095503172.1 RNA-guided endonuclease TnpB family protein -
  GJV52_RS07825 (GJV52_07825) secB 1533334..1533768 (+) 435 WP_095503609.1 protein-export chaperone SecB -
  GJV52_RS07830 (GJV52_07830) recG 1533867..1535909 (+) 2043 WP_100564292.1 ATP-dependent DNA helicase RecG Machinery gene
  GJV52_RS07835 (GJV52_07835) - 1536007..1536543 (+) 537 WP_095503619.1 isochorismatase family protein -
  GJV52_RS07840 (GJV52_07840) - 1536556..1537056 (+) 501 WP_095503611.1 GNAT family N-acetyltransferase -
  GJV52_RS07845 (GJV52_07845) - 1537114..1538346 (-) 1233 WP_100564290.1 N-acetylmuramoyl-L-alanine amidase -
  GJV52_RS07850 (GJV52_07850) tsaE 1538334..1538804 (-) 471 WP_095503613.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  GJV52_RS07855 (GJV52_07855) murI 1539061..1539870 (+) 810 WP_154143257.1 glutamate racemase -
  GJV52_RS07860 (GJV52_07860) nadC 1539926..1540807 (-) 882 WP_095503615.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 680 a.a.        Molecular weight: 74945.51 Da        Isoelectric Point: 6.8452

>NTDB_id=400322 GJV52_RS07830 WP_100564292.1 1533867..1535909(+) (recG) [Neisseria brasiliensis strain N.177.16]
MMTPETQKQLKVTDTTAKKLDKLNLNSAWDLALHLPLRYEDETHIMPIADAPVGVPCQVEGEVVHQEVTFKPRKQLVVQI
ADGSGSVLHLRFIHFYASHQKQMAVGKRIRAVGEIKRGFYGDEMIHPKIRDAESTGLAESLTPIYPTVSGLNQPTLRRIV
QTALDSIPLHDTLPDDLLGRLKLPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGAA
APLNGDGSLVQKLLDSLPFSLTQAQQRVVGEIKQDLTETFPMHRLLQGDVGSGKTIVAALSALTAIEAGAQVAVMAPTEI
LAEQHFIKFKQWFESLGLTVAWLSGSQRKKEKDSNKTAISDGLAQIAVGTHALFQDDVAFHNLGLVIVDEQHRFGVAQRL
ALKNKGNDVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPNRTPIKTRLVNSVRRAEVEGLVLGTCQKGQQAYWVCPLI
EESETLQLQTAVDTLAELQTALPELNIGLVHGRMKPAEKAEVMAEFIAGRLNVLVATTVIEVGVDVPNASLMVIEHAERM
GLAQLHQLRGRVGRGAAASACVLLFTEPLSELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEE
DLHLLEQAREIAPKLIAERPDIVQAHLDRWLSSREGYLGV

Nucleotide


Download         Length: 2043 bp        

>NTDB_id=400322 GJV52_RS07830 WP_100564292.1 1533867..1535909(+) (recG) [Neisseria brasiliensis strain N.177.16]
ATGATGACACCCGAAACCCAAAAACAGCTCAAAGTCACCGACACCACCGCCAAAAAGCTCGACAAGCTGAATTTAAACAG
CGCGTGGGATTTGGCGCTGCACCTGCCTTTGCGCTATGAAGACGAAACCCACATCATGCCGATTGCCGATGCGCCGGTGG
GCGTGCCGTGTCAGGTGGAAGGGGAAGTGGTGCATCAGGAAGTGACCTTCAAGCCGCGCAAGCAATTGGTGGTGCAGATT
GCCGATGGTTCTGGCAGCGTGTTGCATTTGCGTTTTATTCATTTTTACGCCAGCCACCAAAAGCAAATGGCGGTGGGCAA
ACGCATTCGCGCGGTGGGCGAAATCAAGCGCGGGTTTTACGGCGATGAGATGATTCACCCGAAAATCCGCGATGCCGAGA
GTACCGGTTTGGCCGAAAGCCTTACACCGATTTACCCGACGGTGAGCGGCTTAAACCAGCCGACCCTGCGCCGCATTGTT
CAGACGGCCTTAGACAGCATTCCTTTGCACGACACCTTGCCCGACGATTTATTAGGCCGTCTGAAACTGCCACACTTGGC
CGAAAGCCTGCGCCTGCTGCACTCGCCGCCGCCGAGCTTCACCATACACCAGCTTTCAGATGGCACCTTGCCCGCATGGC
AGCGGCTGAAATTTGACGAACTGTTGGCGCAGCAACTGTCCATGCGCTTGGCGCGGCAAAAACGCGTCAGCGGCGCAGCG
GCACCGTTAAACGGCGACGGCAGCTTGGTGCAAAAGCTGCTTGACTCGTTGCCATTTTCCCTGACTCAAGCGCAGCAGCG
CGTGGTGGGCGAAATCAAGCAAGATTTGACCGAAACCTTTCCCATGCACCGCCTGCTGCAAGGCGATGTCGGCAGCGGTA
AAACCATTGTCGCCGCCTTGTCCGCACTCACCGCCATCGAAGCCGGTGCGCAAGTCGCGGTAATGGCGCCGACCGAAATT
TTGGCCGAACAACACTTTATCAAGTTCAAACAATGGTTTGAGTCACTCGGTTTGACCGTGGCTTGGCTTTCCGGCAGCCA
GCGCAAAAAAGAAAAAGACAGCAACAAAACCGCTATTTCAGACGGCCTTGCCCAAATCGCCGTTGGCACGCATGCGCTGT
TTCAAGACGATGTTGCCTTCCACAATCTCGGCTTGGTGATTGTCGACGAGCAACACCGCTTCGGCGTGGCGCAACGTTTG
GCCCTAAAAAACAAAGGCAACGACGTGCATCAGCTGATGATGTCGGCCACGCCGATTCCGCGCACATTGGCCATGAGCTT
TTTCGCCGATTTGGACGTGTCCGTCATCGACGAATTGCCGCCCAACCGCACGCCGATTAAAACACGGCTGGTGAATAGCG
TGCGCCGTGCCGAAGTCGAAGGGCTGGTGTTGGGCACTTGCCAAAAAGGGCAGCAGGCGTATTGGGTGTGTCCGCTGATT
GAAGAGAGCGAAACGCTGCAACTGCAAACCGCCGTTGATACTCTTGCCGAGCTTCAGACGGCCTTACCCGAACTCAACAT
CGGCTTGGTGCACGGCCGCATGAAACCCGCCGAAAAAGCCGAAGTGATGGCCGAATTTATCGCAGGCCGTCTGAATGTGT
TGGTGGCGACGACCGTGATTGAAGTTGGTGTCGATGTACCCAATGCCAGCCTGATGGTGATTGAACACGCCGAACGCATG
GGCTTGGCGCAATTGCACCAGCTGCGCGGCCGTGTGGGGCGTGGCGCCGCCGCCAGCGCCTGCGTGCTGCTGTTTACCGA
GCCATTAAGCGAACTGGCCAAAGCGCGCCTGAAAGTGATTTACGAACACACCGACGGCTTTGAAATCGCCCGCCAAGACT
TGAATATCCGCGGCCCCGGCGAATTCTTAGGCGCACGTCAAAGCGGCGTACCGATGCTGCGGTTTGCCAATTTGGAAGAA
GATTTGCACCTGCTCGAACAAGCCCGCGAAATTGCGCCGAAACTGATTGCCGAACGGCCGGATATTGTGCAGGCGCACTT
GGATCGGTGGTTGAGCAGCCGGGAAGGGTACTTGGGGGTGTGA

Domains

Predicted by InterproScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(604-665)

DEAD/DEAH box helicase (DEAD)

(283-421)

RecG wedge domain (RecG_wedge)

(11-165)

Helicase conserved C-terminal domain (Helicase_C)

(468-575)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

85.588

100

0.856

Multiple sequence alignment