Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   GJV52_RS00265 Genome accession   NZ_CP046027
Coordinates   44737..46476 (-) Length   579 a.a.
NCBI ID   WP_100563367.1    Uniprot ID   -
Organism   Neisseria brasiliensis strain N.177.16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 39737..51476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV52_RS00250 (GJV52_00250) - 41092..42051 (-) 960 WP_095503186.1 acetyl-CoA carboxylase carboxyltransferase subunit alpha -
  GJV52_RS00255 (GJV52_00255) - 42272..42673 (+) 402 WP_095503187.1 RNA-binding S4 domain-containing protein -
  GJV52_RS00260 (GJV52_00260) - 43216..44352 (-) 1137 WP_100563396.1 hypothetical protein -
  GJV52_RS00265 (GJV52_00265) recD 44737..46476 (-) 1740 WP_100563367.1 exodeoxyribonuclease V subunit alpha Machinery gene
  GJV52_RS00270 (GJV52_00270) lolD 46713..47393 (-) 681 WP_100563365.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  GJV52_RS00275 (GJV52_00275) - 47386..48636 (-) 1251 WP_095503191.1 lipoprotein-releasing ABC transporter permease subunit -
  GJV52_RS00280 (GJV52_00280) - 48854..49141 (+) 288 WP_100563363.1 hypothetical protein -
  GJV52_RS00285 (GJV52_00285) recR 49202..49807 (-) 606 WP_100563361.1 recombination mediator RecR -
  GJV52_RS00290 (GJV52_00290) - 49887..51416 (-) 1530 WP_100563359.1 SurA N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 64181.46 Da        Isoelectric Point: 6.2585

>NTDB_id=400301 GJV52_RS00265 WP_100563367.1 44737..46476(-) (recD) [Neisseria brasiliensis strain N.177.16]
MNAPIDLNQAAALAATQFLQHYAPEDAVVVTPYVEALFSALQSGHSFIWVSDKEAAALKRAVLVVGTDGETPLVLNGRRL
FLGRLWQLEHDLAVEIKRLAMASVDDVDWLQASQNLQNWFAEIGSEGQRDAAGLALLQAFMLITGGPGTGKTTTVAKLLG
LICDNATSLPRIALAAPTGKAAAHMARALHRALDRFDLPERIKQHLLLLEGQTVHRLLKLRPPQMQSAFHAEQPLPLDVL
VVDEASMLDLSLLLQLLKAIPSGCRVIFLGDEFQLPSVGVGAVLAALSRETVLDEDTHRRLSEYLPQHTFKVAEHPPALS
QNIAHLQVSHRFGTDSGIGCLARAVVSGDSETAWAQFERFPDELQVLHADMKHQAEYLYHKHEKYWQAVESGNVALAFGH
AADVVVLTAWRQDAENFNQAYFRHLQAKQRISGDMPWFAGQMIMITRNDYALDVFNGDIGLIMPDGESANGLAAYFPFAD
SFRKIPISRLPAFETAFAMTVHKSQGSEYREVWLLPPSIDMANESDDVLNSLNNALLYTGITRAQKRFVFWGNKKIFEWA
VKTQKKRQTALDEIINALF

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=400301 GJV52_RS00265 WP_100563367.1 44737..46476(-) (recD) [Neisseria brasiliensis strain N.177.16]
ATGAATGCGCCCATCGATTTGAACCAAGCAGCGGCCTTGGCTGCAACCCAGTTTTTGCAACACTACGCGCCCGAAGATGC
GGTGGTGGTGACCCCTTATGTTGAAGCCTTGTTTAGCGCGCTGCAAAGCGGGCATTCGTTTATCTGGGTCAGCGATAAAG
AAGCGGCAGCCTTGAAACGTGCTGTTTTGGTGGTGGGCACCGATGGTGAAACGCCGCTGGTGCTGAACGGGCGGCGTTTG
TTTTTGGGCAGGCTTTGGCAGTTGGAACACGATTTAGCGGTTGAAATCAAGCGGCTGGCCATGGCCTCTGTTGATGATGT
TGATTGGCTGCAGGCTTCGCAAAATCTGCAAAACTGGTTTGCCGAAATAGGCAGCGAAGGACAGCGCGATGCCGCCGGTT
TGGCTTTGCTGCAAGCGTTTATGCTGATTACAGGCGGGCCGGGCACCGGTAAAACGACCACGGTTGCCAAATTATTGGGT
TTGATTTGCGATAATGCCACCAGCTTACCGCGCATTGCCTTGGCTGCACCGACAGGCAAAGCAGCCGCGCATATGGCACG
CGCGCTGCATCGTGCTTTAGATCGCTTTGATTTGCCTGAACGTATTAAGCAACACTTGTTGCTTTTAGAAGGCCAAACCG
TGCATCGCCTATTGAAGCTGCGCCCACCGCAAATGCAATCGGCCTTTCATGCAGAACAGCCTTTGCCTTTGGATGTGTTG
GTGGTGGATGAAGCATCGATGCTCGATTTATCGCTGTTGTTGCAATTGCTCAAAGCCATTCCGAGCGGTTGCCGCGTAAT
CTTTTTGGGGGATGAATTTCAATTGCCGTCGGTTGGTGTGGGCGCAGTATTGGCCGCCTTATCGCGCGAAACCGTTTTGG
ATGAAGACACTCATCGCCGTTTAAGCGAATATTTGCCGCAGCATACATTTAAAGTTGCCGAACATCCGCCGGCTTTATCG
CAAAACATCGCCCATTTGCAGGTTAGCCACCGTTTTGGTACGGATAGCGGCATCGGTTGCTTGGCGCGGGCAGTGGTTTC
AGGTGACAGTGAAACAGCGTGGGCGCAGTTTGAACGCTTTCCCGATGAATTGCAGGTATTGCATGCCGACATGAAGCATC
AAGCCGAATACTTGTATCACAAGCATGAAAAATACTGGCAGGCAGTTGAAAGCGGCAATGTGGCACTGGCATTTGGCCAT
GCAGCGGATGTGGTGGTGTTAACGGCTTGGCGACAAGATGCGGAAAACTTTAATCAGGCTTATTTCCGCCATTTACAGGC
TAAACAGCGTATATCGGGCGATATGCCATGGTTTGCCGGACAAATGATAATGATCACGCGCAATGATTATGCGTTAGATG
TGTTCAATGGCGACATCGGCTTGATTATGCCGGATGGCGAATCAGCTAATGGCTTGGCGGCGTATTTTCCGTTTGCAGAC
AGTTTCAGAAAAATCCCAATCAGTCGGCTGCCGGCTTTTGAAACAGCATTTGCCATGACCGTGCATAAAAGCCAAGGTTC
AGAATATCGGGAAGTGTGGTTGCTGCCGCCGAGTATTGATATGGCCAATGAAAGTGATGACGTGTTAAACAGCTTAAATA
ATGCGCTGTTGTACACAGGTATCACTCGTGCGCAGAAGCGTTTTGTGTTTTGGGGCAACAAAAAAATCTTTGAATGGGCA
GTAAAAACCCAGAAAAAGCGTCAAACAGCCTTAGATGAAATAATTAATGCCTTGTTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(125-294)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(496-547)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

61.812

97.237

0.601

Multiple sequence alignment