Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   SGGBAA2069_RS01570 Genome accession   NC_015215
Coordinates   287019..287501 (+) Length   160 a.a.
NCBI ID   WP_043913839.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 270161..287907 287019..287501 within 0


Gene organization within MGE regions


Location: 270161..287907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGGBAA2069_RS01475 (SGGBAA2069_c02520) - 270161..270493 (-) 333 Protein_248 Rep family protein -
  SGGBAA2069_RS11880 - 270545..271896 (+) 1352 WP_148263002.1 IS3 family transposase -
  SGGBAA2069_RS11885 - 271911..272178 (-) 268 Protein_250 Rep family protein -
  SGGBAA2069_RS01490 (SGGBAA2069_c02560) - 272378..272995 (-) 618 WP_043913564.1 hypothetical protein -
  SGGBAA2069_RS01495 - 272997..274082 (-) 1086 WP_043913566.1 helicase HerA domain-containing protein -
  SGGBAA2069_RS01500 (SGGBAA2069_c02570) - 274082..274396 (-) 315 WP_013642670.1 hypothetical protein -
  SGGBAA2069_RS01505 (SGGBAA2069_c02580) - 274533..275018 (-) 486 WP_013642671.1 helix-turn-helix domain-containing protein -
  SGGBAA2069_RS01510 (SGGBAA2069_c02600) - 275505..276260 (+) 756 WP_013642673.1 hypothetical protein -
  SGGBAA2069_RS01515 (SGGBAA2069_c02610) - 276321..276659 (-) 339 WP_013642674.1 hypothetical protein -
  SGGBAA2069_RS12140 (SGGBAA2069_c02620) - 276676..277707 (-) 1032 WP_013642675.1 hypothetical protein -
  SGGBAA2069_RS01525 (SGGBAA2069_c02630) - 277847..278179 (+) 333 WP_013642676.1 helix-turn-helix domain-containing protein -
  SGGBAA2069_RS01530 (SGGBAA2069_c02640) - 278235..278696 (+) 462 WP_013642677.1 hypothetical protein -
  SGGBAA2069_RS01535 (SGGBAA2069_c02650) - 278686..279489 (+) 804 WP_013642678.1 hypothetical protein -
  SGGBAA2069_RS01540 (SGGBAA2069_c02660) - 279604..280917 (+) 1314 WP_148263004.1 hypothetical protein -
  SGGBAA2069_RS01570 (SGGBAA2069_c02670) comX/sigX 287019..287501 (+) 483 WP_043913839.1 sigma-70 family RNA polymerase sigma factor Regulator
  SGGBAA2069_RS01575 (SGGBAA2069_c02680) - 287641..287907 (+) 267 WP_009853366.1 ACT domain-containing protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 19246.13 Da        Isoelectric Point: 7.9986

>NTDB_id=40030 SGGBAA2069_RS01570 WP_043913839.1 287019..287501(+) (comX/sigX) [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069]
METFESYFEKVKPIVLKLRRHYFVKLWDYDDWLQEGRVVLFRLLQEKPDLLQDDLSLYAYFKTKFSNYLKDVIRHQESLK
RKFNQLPYEEISDVGHCLAQASFLDLADYVAYQERLQAVEQRLGAGAKEKLAKVMRGERFEGKKAFLTQIEPFFNEFREK

Nucleotide


Download         Length: 483 bp        

>NTDB_id=40030 SGGBAA2069_RS01570 WP_043913839.1 287019..287501(+) (comX/sigX) [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069]
ATGGAAACCTTTGAAAGCTATTTTGAAAAGGTCAAACCGATTGTGCTTAAGTTGCGTCGTCACTATTTTGTCAAATTATG
GGACTATGATGATTGGTTACAAGAGGGACGGGTGGTTCTGTTCCGTCTCCTGCAAGAAAAGCCAGACTTGTTGCAGGACG
ACTTGTCCCTTTATGCTTATTTTAAAACGAAGTTTTCCAACTATCTCAAGGATGTGATTCGCCATCAAGAGAGTTTGAAA
CGCAAGTTTAATCAGCTGCCATATGAGGAGATTAGTGACGTGGGGCATTGTTTGGCGCAAGCAAGCTTTCTGGATCTGGC
GGATTATGTGGCTTATCAGGAGCGGCTGCAGGCGGTTGAGCAGCGATTGGGAGCGGGAGCAAAAGAAAAACTAGCGAAGG
TGATGCGAGGGGAGCGCTTTGAGGGCAAGAAGGCGTTTCTAACCCAAATTGAGCCCTTCTTTAACGAGTTTAGGGAAAAA
TAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.