Detailed information
Bioinformatically predicted
Overview
| Name | comE1/comEA | Type | Machinery gene |
| Locus tag | HUF04_RS10300 | Genome accession | NZ_CP054581 |
| Coordinates | 2160613..2160936 (+) | Length | 107 a.a. |
| NCBI ID | WP_003150898.1 | Uniprot ID | A0A2R3IP58 |
| Organism | Pseudomonas aeruginosa strain YTSEY8 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2155613..2165936
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUF04_RS10285 (HUF04_10300) | - | 2156413..2157369 (+) | 957 | WP_003150895.1 | SDR family oxidoreductase | - |
| HUF04_RS10290 (HUF04_10305) | - | 2157371..2158390 (+) | 1020 | WP_003150897.1 | glycosyltransferase family 4 protein | - |
| HUF04_RS10295 (HUF04_10310) | - | 2158425..2160422 (+) | 1998 | WP_033977396.1 | nucleoside-diphosphate sugar epimerase/dehydratase | - |
| HUF04_RS10300 (HUF04_10315) | comE1/comEA | 2160613..2160936 (+) | 324 | WP_003150898.1 | ComEA family DNA-binding protein | Machinery gene |
| HUF04_RS10310 (HUF04_10325) | - | 2161154..2162350 (-) | 1197 | WP_003150900.1 | amino acid aminotransferase | - |
| HUF04_RS10315 (HUF04_10330) | uvrB | 2162537..2164549 (+) | 2013 | WP_003150902.1 | excinuclease ABC subunit UvrB | Machinery gene |
Sequence
Protein
Download Length: 107 a.a. Molecular weight: 11221.07 Da Isoelectric Point: 6.4592
>NTDB_id=400252 HUF04_RS10300 WP_003150898.1 2160613..2160936(+) (comE1/comEA) [Pseudomonas aeruginosa strain YTSEY8]
MHLIKSALFLILFACLPFSASAAPAAAKPPVVATTPTEASTAEVVNINTADEATLVRGLNGVGEVKAKAIVEYRTAHGPF
VSLDQLLEVKGVGPALLEKNRERIAIE
MHLIKSALFLILFACLPFSASAAPAAAKPPVVATTPTEASTAEVVNINTADEATLVRGLNGVGEVKAKAIVEYRTAHGPF
VSLDQLLEVKGVGPALLEKNRERIAIE
Nucleotide
Download Length: 324 bp
>NTDB_id=400252 HUF04_RS10300 WP_003150898.1 2160613..2160936(+) (comE1/comEA) [Pseudomonas aeruginosa strain YTSEY8]
ATGCACCTAATCAAATCCGCCTTGTTCCTCATCCTGTTCGCCTGCCTGCCGTTTTCGGCTTCCGCCGCGCCGGCCGCCGC
CAAGCCTCCGGTGGTCGCGACAACGCCGACGGAGGCGTCGACAGCGGAGGTGGTCAATATCAATACGGCCGACGAGGCGA
CGCTGGTGCGTGGGTTGAACGGCGTCGGCGAGGTCAAGGCCAAGGCGATCGTCGAATACCGAACGGCTCATGGTCCGTTC
GTTTCGCTGGATCAGTTGCTGGAAGTGAAGGGCGTGGGACCGGCGCTGCTGGAGAAGAACCGGGAGCGGATCGCCATAGA
GTGA
ATGCACCTAATCAAATCCGCCTTGTTCCTCATCCTGTTCGCCTGCCTGCCGTTTTCGGCTTCCGCCGCGCCGGCCGCCGC
CAAGCCTCCGGTGGTCGCGACAACGCCGACGGAGGCGTCGACAGCGGAGGTGGTCAATATCAATACGGCCGACGAGGCGA
CGCTGGTGCGTGGGTTGAACGGCGTCGGCGAGGTCAAGGCCAAGGCGATCGTCGAATACCGAACGGCTCATGGTCCGTTC
GTTTCGCTGGATCAGTTGCTGGAAGTGAAGGGCGTGGGACCGGCGCTGCTGGAGAAGAACCGGGAGCGGATCGCCATAGA
GTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE1/comEA | Haemophilus influenzae Rd KW20 |
43.689 |
96.262 |
0.421 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
42.308 |
97.196 |
0.411 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
42.268 |
90.654 |
0.383 |
| comEA | Vibrio cholerae C6706 |
39.423 |
97.196 |
0.383 |
| comEA | Vibrio cholerae strain A1552 |
39.423 |
97.196 |
0.383 |
| comEA | Acinetobacter baylyi ADP1 |
54.054 |
69.159 |
0.374 |
| comEA | Acinetobacter baumannii strain A118 |
29.323 |
100 |
0.364 |