Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   FOC72_RS10090 Genome accession   NZ_CP054570
Coordinates   2087327..2088100 (-) Length   257 a.a.
NCBI ID   WP_002894325.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain FDAARGOS_770     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2082327..2093100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC72_RS10075 (FOC72_10075) purC 2085211..2085918 (-) 708 WP_002894328.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  FOC72_RS10080 (FOC72_10080) - 2086072..2086320 (-) 249 WP_002894327.1 acyl carrier protein -
  FOC72_RS10085 (FOC72_10085) plsX 2086323..2087321 (-) 999 WP_002894326.1 phosphate acyltransferase PlsX -
  FOC72_RS10090 (FOC72_10090) recO 2087327..2088100 (-) 774 WP_002894325.1 DNA repair protein RecO Machinery gene
  FOC72_RS10095 (FOC72_10095) - 2088093..2089265 (-) 1173 WP_002894324.1 pyridoxal phosphate-dependent aminotransferase -
  FOC72_RS10100 (FOC72_10100) srtB 2089445..2090287 (-) 843 WP_002894323.1 class B sortase, LPKTxAVK-specific -
  FOC72_RS10105 (FOC72_10105) - 2090382..2090951 (-) 570 WP_002894322.1 LPKTxAVK-anchored surface protein -
  FOC72_RS10110 (FOC72_10110) - 2091266..2092231 (-) 966 WP_002894321.1 ribose-phosphate diphosphokinase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29733.05 Da        Isoelectric Point: 5.3557

>NTDB_id=400210 FOC72_RS10090 WP_002894325.1 2087327..2088100(-) (recO) [Streptococcus sanguinis strain FDAARGOS_770]
MLKSLTSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGKSKLAPVIQPLTAANLLMKINDDGLSYIEDYQDVVTYH
RINEDLFIMAYASYVAALADASLQDNQPDPALFAFLQKTLELMNNGLDYEVLTNIFEIQILSRFGVSLNFHDCAFCHRTG
LPFDFSFKYSGVLCPDHYHQDERRCYLNPNLPFLLDQFQAVRFSELETISLKPDIKKQLRDFIDLLYDEYVGIHLKSKKF
IDSLGDWGSILKDKNEE

Nucleotide


Download         Length: 774 bp        

>NTDB_id=400210 FOC72_RS10090 WP_002894325.1 2087327..2088100(-) (recO) [Streptococcus sanguinis strain FDAARGOS_770]
ATGCTTAAATCTCTAACAAGTCAAGGTCTGGTTCTCTATAACCGCAATTTCCGTGAGGATGATAAGCTGGTCAAGATCTT
TACGGAACAGGCTGGTAAGCGTATGTTTTTCGTCAAGCATGCTGGTAAATCCAAGCTAGCACCCGTCATTCAGCCCTTGA
CTGCGGCGAACTTGCTGATGAAAATCAATGATGATGGTCTTAGCTATATTGAGGATTATCAGGATGTGGTTACCTACCAT
CGCATCAATGAGGACTTATTCATCATGGCCTATGCCAGCTATGTTGCAGCCTTGGCAGATGCCAGTCTTCAGGACAATCA
GCCGGATCCGGCGCTCTTTGCCTTTCTGCAGAAAACCCTGGAGCTGATGAATAATGGTCTGGACTATGAAGTGCTGACTA
ATATCTTTGAGATTCAGATTTTGTCACGTTTTGGAGTTTCGCTGAACTTCCATGATTGTGCTTTTTGTCATCGGACGGGT
CTGCCTTTTGACTTCTCTTTCAAATATAGCGGAGTCCTTTGCCCTGATCATTACCATCAGGATGAACGGCGCTGTTATCT
AAATCCTAATCTTCCTTTTCTGCTGGACCAATTTCAGGCGGTTCGCTTTAGCGAATTGGAGACCATTTCTTTGAAGCCAG
ATATAAAAAAGCAGCTACGGGATTTTATTGACCTGCTCTATGATGAATATGTCGGCATCCATCTCAAATCCAAAAAATTT
ATAGATTCTCTGGGGGACTGGGGAAGCATTTTAAAAGATAAGAACGAGGAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(5-74)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

76.172

99.611

0.759

Multiple sequence alignment