Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   FOC72_RS07960 Genome accession   NZ_CP054570
Coordinates   1657595..1658053 (-) Length   152 a.a.
NCBI ID   WP_002896474.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain FDAARGOS_770     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1652595..1663053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC72_RS07950 (FOC72_07950) rcrQ 1654089..1655846 (-) 1758 WP_002896472.1 ABC transporter ATP-binding protein Regulator
  FOC72_RS07955 (FOC72_07955) rcrP 1655836..1657602 (-) 1767 WP_032914258.1 ABC transporter ATP-binding protein Regulator
  FOC72_RS07960 (FOC72_07960) rcrR 1657595..1658053 (-) 459 WP_002896474.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  FOC72_RS07965 (FOC72_07965) - 1658207..1658617 (-) 411 WP_002896475.1 peptide deformylase -
  FOC72_RS07970 (FOC72_07970) scrK 1658664..1659563 (-) 900 WP_002896476.1 fructokinase ScrK -
  FOC72_RS07975 (FOC72_07975) - 1659721..1661733 (-) 2013 WP_002896477.1 sucrose-specific PTS transporter subunit IIBC -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17555.43 Da        Isoelectric Point: 9.4392

>NTDB_id=400186 FOC72_RS07960 WP_002896474.1 1657595..1658053(-) (rcrR) [Streptococcus sanguinis strain FDAARGOS_770]
MEKPLLEMKRFGRKIHLIVEKLAKEHGIESMAGPQGQVLHIVACRTEEGKDTLIKDIEQKLDISKSVASNLMKRMEKNGF
IQLETSKTDKRAKYIRLTPQSQERMKKIRDFFDEMDRAILNGVSEQELLIFSQVMAKFYQNIESLENGGKDV

Nucleotide


Download         Length: 459 bp        

>NTDB_id=400186 FOC72_RS07960 WP_002896474.1 1657595..1658053(-) (rcrR) [Streptococcus sanguinis strain FDAARGOS_770]
ATGGAAAAGCCTTTGTTAGAAATGAAGCGTTTTGGACGAAAGATTCACCTCATAGTGGAAAAGCTTGCTAAGGAGCACGG
GATTGAGTCCATGGCTGGGCCTCAGGGGCAGGTCTTGCATATTGTCGCCTGTCGTACGGAAGAAGGGAAGGATACTCTTA
TCAAGGATATTGAGCAGAAGTTGGATATTTCTAAATCGGTGGCCTCTAACTTAATGAAAAGGATGGAGAAGAACGGCTTT
ATCCAACTGGAAACGAGCAAGACAGACAAGCGGGCTAAGTATATCCGCCTTACTCCGCAGTCGCAGGAAAGAATGAAGAA
AATCCGTGACTTTTTTGATGAAATGGATCGTGCTATTTTGAATGGTGTTTCTGAGCAAGAACTGCTGATTTTTTCACAAG
TCATGGCCAAGTTTTATCAGAATATCGAAAGTTTAGAAAATGGAGGAAAAGATGTTTAA

Domains

Predicted by InterProScan.

Winged helix DNA-binding domain (HTH_27)

(33-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

41.096

96.053

0.395