Detailed information NTG0400164

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FOC72_RS06225
• Genome accession: NZ_CP054570
• Coordinates: 1313361..1314473 (-)
• Length: 370 a.a.
• NCBI ID: WP_002895944.1
• Uniprot ID: A0ABM5NJD0
• Organism: Streptococcus sanguinis strain FDAARGOS_770
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1308361..1319473

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FOC72_RS06210 (FOC72_06210)	-	1311447..1312298 (-)	852	WP_002895941.1	DUF695 domain-containing protein	-
FOC72_RS06220 (FOC72_06220)	-	1312895..1313233 (-)	339	WP_002895943.1	metal-sulfur cluster assembly factor	-
FOC72_RS06225 (FOC72_06225)	rpoS	1313361..1314473 (-)	1113	WP_002895944.1	RNA polymerase sigma factor RpoD	Regulator
FOC72_RS06230 (FOC72_06230)	dnaG	1314476..1316260 (-)	1785	WP_302479831.1	DNA primase	-
FOC72_RS06235 (FOC72_06235)	mscL	1316415..1316798 (+)	384	WP_002895947.1	large conductance mechanosensitive channel protein MscL	-
FOC72_RS06240 (FOC72_06240)	rpsU	1316912..1317088 (-)	177	WP_000048054.1	30S ribosomal protein S21	-
FOC72_RS06245 (FOC72_06245)	-	1317236..1317919 (-)	684	WP_002895949.1	DUF4956 domain-containing protein	-
FOC72_RS06250 (FOC72_06250)	-	1317931..1318662 (-)	732	WP_002895950.1	polyphosphate polymerase domain-containing protein	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42318.94 Da
• Isoelectric Point: 4.4233

>NTDB_id=400164 FOC72_RS06225 WP_002895944.1 1313361..1314473(-) (rpoS) [Streptococcus sanguinis strain FDAARGOS_770]
MATKQKEVTTLDVQIAEFIRNHKQTGVATDDEINDQLVIPFTLDADGIEDLLQRIQDAGISITDKEGNPSARVLNTEEEE
AELTDEELLGSNSAKVNDPVRMYLKEIGVVPLLSNEEEQELAILVEQGDLEAKQRLAEANLRLVVSIAKRYVGRGMQFLD
LIQEGNMGLMKAVDKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQI
AERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRF
GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKPLRDFIED

Nucleotide

• Length: 1113 bp

>NTDB_id=400164 FOC72_RS06225 WP_002895944.1 1313361..1314473(-) (rpoS) [Streptococcus sanguinis strain FDAARGOS_770]
ATGGCTACAAAACAAAAAGAAGTAACAACATTAGACGTTCAAATTGCAGAATTTATCCGCAACCACAAGCAGACTGGAGT
TGCGACAGATGATGAAATCAATGATCAGTTGGTCATTCCTTTCACTTTGGACGCTGATGGGATTGAGGATTTGCTGCAGC
GCATCCAGGATGCTGGCATCTCAATTACAGATAAGGAAGGAAATCCCAGCGCGCGCGTCTTGAATACTGAAGAGGAAGAA
GCGGAGCTGACAGATGAAGAGCTCTTGGGCAGCAATTCAGCCAAGGTCAATGACCCAGTCCGCATGTATCTGAAAGAAAT
CGGGGTTGTGCCCCTTCTCAGCAATGAAGAAGAGCAGGAGCTGGCTATCTTGGTAGAGCAGGGAGACTTGGAAGCCAAGC
AGCGTCTGGCTGAGGCCAATCTTCGTCTGGTTGTTTCCATTGCTAAGCGCTATGTTGGCCGTGGCATGCAGTTCCTTGAT
TTGATTCAAGAAGGGAACATGGGGCTGATGAAAGCCGTTGATAAGTTTGACTACACCAAAGGATTTAAGTTTTCAACGTA
TGCGACTTGGTGGATTCGTCAGGCCATTACCCGTGCGATTGCTGACCAAGCTCGGACTATTCGGATTCCAGTCCACATGG
TGGAAACTATTAACAAGCTAGTCCGCGAGCAACGCAATCTCTTGCAGGAATTAGGTCAAGATCCTACGCCTGAGCAAATC
GCTGAGCGTATGGATATGACACCTGACAAGGTTCGTGAGATTCTCAAGATTGCCCAGGAGCCAGTGTCGCTGGAGACCCC
TATCGGTGAGGAAGACGACAGTCATCTGGGTGACTTTATCGAAGATGAAGTGATTGAAAATCCAGTCGACTATACTACTC
GTGTTGTCCTTCGTGAGCAGCTGGATGAGGTCTTGGATACGCTGACAGACCGCGAAGAAAACGTCTTGCGTCTGCGCTTT
GGTCTGGACGATGGGAAAATGCGGACACTGGAAGATGTCGGTAAGGTCTTCAATGTTACCCGCGAGCGGATTCGCCAGAT
TGAAGCCAAGGCCCTGCGTAAACTTCGCCATCCAAGCCGCAGTAAACCACTCAGAGACTTTATTGAAGATTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (136-205)

• Sigma-70 region 3 (Sigma70_r3) (215-291)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (98-130)

• Sigma-70, region 4 (Sigma70_r4) (304-357)

• Sigma-70 factor, region 1.1 (Sigma70_r1_1) (14-87)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	46.575	78.919	0.368