Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   FOC72_RS03535 Genome accession   NZ_CP054570
Coordinates   716141..718363 (+) Length   740 a.a.
NCBI ID   WP_002895179.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain FDAARGOS_770     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 711141..723363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC72_RS03505 (FOC72_03505) - 711220..711843 (+) 624 WP_002895165.1 hypothetical protein -
  FOC72_RS03510 (FOC72_03510) rnz 711854..712783 (+) 930 WP_002895167.1 ribonuclease Z -
  FOC72_RS03515 (FOC72_03515) - 712780..713535 (+) 756 WP_002895169.1 SDR family oxidoreductase -
  FOC72_RS03520 (FOC72_03520) - 713542..714252 (+) 711 WP_002895171.1 class I SAM-dependent methyltransferase -
  FOC72_RS03525 (FOC72_03525) - 714400..715209 (+) 810 WP_002895174.1 acyltransferase family protein -
  FOC72_RS03530 (FOC72_03530) - 715445..716035 (+) 591 WP_002895177.1 HD domain-containing protein -
  FOC72_RS03535 (FOC72_03535) recJ 716141..718363 (+) 2223 WP_002895179.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  FOC72_RS03540 (FOC72_03540) - 718638..719150 (+) 513 WP_002895180.1 adenine phosphoribosyltransferase -
  FOC72_RS03545 (FOC72_03545) metA 719298..720239 (+) 942 WP_002895181.1 homoserine O-succinyltransferase -
  FOC72_RS03550 (FOC72_03550) - 720248..720928 (+) 681 WP_002895182.1 DnaD domain-containing protein -
  FOC72_RS03555 (FOC72_03555) yghU 720996..721784 (+) 789 WP_002895183.1 glutathione-dependent disulfide-bond oxidoreductase -
  FOC72_RS03560 (FOC72_03560) - 721926..722615 (+) 690 WP_002895185.1 tRNA (adenine(22)-N(1))-methyltransferase TrmK -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 82922.40 Da        Isoelectric Point: 4.3740

>NTDB_id=400146 FOC72_RS03535 WP_002895179.1 716141..718363(+) (recJ) [Streptococcus sanguinis strain FDAARGOS_770]
MISSKYDWQFATNFTDEKFLKKAKKAGLEPAAASLLYQRGVQTEEALQEFLEPSLDQLHDPYDLHDMERAVNRIRSAIEN
YEQILIYGDYDADGMTSASIVKETLEQLGAECQVYLPNRFTDGYGPNSSVYKYFIENQGISLIITVDNGVAGLEAIDLAQ
SLGVDVIVTDHHSMPEELPNAYAIVHPEHRGADYPFKHLAGCGVAFKLATALLEEVQVELLDLVAIGTIADMVSLTGENR
ILVKYGLSVLKNTQRVGLQELFKIAGIQPDELDEETVGFQLAPRLNALGRLDDPNPAVELLTGFDDEEARDIALMINQKN
DERKEIVQQIYEEAQTMLDPKRPVQVLAKEGWNPGVLGIVAGRLLEELHQPVIVLNIEDGIAKGSARSIEAVNIFEALDS
HRDLFVAFGGHAGAAGMTLEADKLAELSDILTAYILDNDLDLTGKTVLYLDEELHLPELTLDTLKSFEKLAPFGMDNKKP
LFYLKDFKVDNTRTMGAGNSHLKLKISQQDASFEVVAFGQGSLATEFAQTKNLELAVSLSVNKWNGQTSLQLMLVDARVD
GVQLFNIRSKNATLPDKVPVLRFTEELPDLTNSRAVVVYDLPDDLQDLKTIFQSQDFEAIYFKNEIAKPYYLTGYGNREQ
FAKLYKTIYQFPEFDVRYKLKDLAAYLKIDPILLVKMIQIFEELGFVSITEGVMTVNKEAEKKEIDSSHIYQDLKRLVKE
QELMALGTVQEIYDYLMEAD

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=400146 FOC72_RS03535 WP_002895179.1 716141..718363(+) (recJ) [Streptococcus sanguinis strain FDAARGOS_770]
ATGATTAGCTCAAAATACGACTGGCAGTTTGCCACAAATTTTACAGACGAAAAATTTTTAAAAAAGGCCAAGAAAGCCGG
ATTGGAACCCGCCGCTGCCAGTCTCCTTTACCAAAGAGGTGTGCAGACTGAAGAGGCTTTACAGGAATTTTTGGAGCCTA
GTTTAGACCAGCTTCACGACCCTTATGATCTGCATGATATGGAGCGGGCAGTGAATCGCATTCGCTCAGCAATTGAGAAT
TATGAACAGATTTTAATCTATGGTGATTATGATGCTGATGGGATGACCTCGGCATCGATTGTCAAGGAAACCTTGGAGCA
GCTGGGGGCTGAGTGTCAAGTTTATCTGCCTAATCGCTTTACGGACGGTTATGGTCCTAATAGCAGTGTTTACAAGTATT
TTATTGAAAATCAAGGCATCTCGCTCATTATTACAGTGGATAATGGAGTAGCGGGCCTCGAAGCTATCGATCTGGCCCAA
TCTCTGGGCGTGGATGTCATCGTGACGGATCACCACTCCATGCCTGAGGAGTTGCCAAATGCCTATGCGATTGTTCATCC
GGAACATAGAGGAGCGGATTACCCTTTCAAGCATCTAGCTGGTTGTGGAGTGGCTTTTAAGTTGGCAACAGCCTTGCTGG
AAGAAGTCCAAGTCGAACTTTTGGACTTAGTGGCTATCGGTACCATTGCTGATATGGTCAGTCTGACGGGAGAGAATCGG
ATTTTGGTCAAATACGGCCTTTCCGTCCTCAAAAATACCCAGCGGGTGGGTCTTCAGGAGCTCTTCAAAATCGCAGGCAT
TCAGCCAGATGAGCTAGACGAAGAAACGGTTGGCTTCCAGCTTGCTCCTCGACTCAATGCACTGGGACGGCTGGATGATC
CAAATCCAGCGGTTGAGCTTTTAACAGGCTTTGATGACGAAGAAGCTCGTGATATTGCGCTTATGATTAACCAGAAAAAT
GACGAGCGCAAGGAAATCGTCCAGCAGATTTATGAAGAAGCACAAACCATGCTGGACCCTAAGAGACCAGTGCAGGTACT
GGCTAAGGAAGGCTGGAATCCTGGAGTGCTAGGGATTGTCGCTGGGCGCTTGCTGGAAGAGTTGCACCAGCCAGTCATAG
TGCTCAATATTGAGGATGGTATCGCTAAGGGCAGCGCCCGCAGTATTGAAGCGGTCAATATTTTTGAAGCCTTGGACAGT
CATCGTGATCTCTTTGTAGCTTTTGGTGGCCATGCTGGAGCGGCTGGAATGACCCTTGAAGCAGACAAACTAGCAGAGCT
ATCTGATATCCTGACAGCCTACATCTTAGACAATGATTTAGATTTGACTGGCAAAACAGTCCTGTATTTGGACGAGGAGC
TGCACCTGCCAGAACTGACCCTGGATACACTCAAAAGCTTTGAAAAACTGGCGCCTTTTGGTATGGATAATAAGAAGCCG
CTTTTTTACCTCAAGGATTTTAAAGTGGACAATACTCGGACTATGGGAGCTGGCAATAGCCATCTCAAGCTAAAAATTTC
TCAACAAGATGCATCTTTTGAAGTAGTAGCTTTTGGGCAAGGAAGCCTGGCGACAGAGTTTGCCCAAACCAAGAATCTGG
AGCTGGCTGTCAGCCTCTCTGTTAATAAATGGAATGGACAGACTAGTCTCCAGCTCATGCTGGTAGATGCTCGTGTGGAC
GGCGTTCAGCTTTTCAATATCCGCAGCAAAAATGCGACGCTGCCTGACAAGGTTCCAGTCTTGCGTTTCACAGAAGAGCT
GCCAGATTTGACAAATAGCAGAGCGGTTGTGGTTTATGACCTGCCTGATGATTTGCAGGACTTGAAGACGATTTTTCAGT
CTCAGGATTTCGAAGCTATTTACTTTAAGAATGAGATTGCCAAGCCTTACTATCTGACTGGTTATGGTAACCGTGAGCAA
TTTGCCAAACTCTACAAGACTATCTATCAGTTTCCCGAGTTTGACGTTCGCTATAAGCTTAAGGATCTAGCAGCTTATCT
GAAAATTGACCCAATTCTCTTGGTCAAAATGATTCAAATTTTTGAAGAGCTGGGCTTTGTCAGCATCACAGAAGGAGTCA
TGACGGTCAATAAGGAAGCTGAAAAGAAAGAAATTGACAGCAGTCACATTTACCAAGACCTCAAGCGCCTAGTCAAAGAA
CAAGAACTCATGGCACTGGGAACTGTGCAGGAGATTTATGATTATTTGATGGAAGCAGACTGA

Domains

Predicted by InterProScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(592-733)

RecJ OB domain (RecJ_OB)

(451-556)

DHHA1 domain (DHHA1)

(317-434)

DHH family (DHH)

(83-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

75.405

100

0.754
  recJ Bacillus subtilis subsp. subtilis str. 168

38.114

100

0.399