Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GJD92_RS14735 Genome accession   NZ_CP046000
Coordinates   2922816..2923445 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 1916D18     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2917816..2928445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJD92_RS14720 (GJD92_14720) helD 2918058..2920112 (-) 2055 WP_000420533.1 DNA helicase IV -
  GJD92_RS14725 (GJD92_14725) yccF 2920235..2920681 (+) 447 WP_001261231.1 YccF domain-containing protein -
  GJD92_RS14730 (GJD92_14730) yccS 2920691..2922853 (+) 2163 WP_000875044.1 YccS family putative transporter -
  GJD92_RS14735 (GJD92_14735) sxy/tfoX 2922816..2923445 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  GJD92_RS14740 (GJD92_14740) sulA 2923664..2924173 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  GJD92_RS14745 (GJD92_14745) ompA 2924530..2925582 (+) 1053 WP_000750419.1 porin OmpA -
  GJD92_RS14750 (GJD92_14750) matP 2925657..2926109 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  GJD92_RS14755 (GJD92_14755) ycbZ 2926295..2928055 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=400124 GJD92_RS14735 WP_000839153.1 2922816..2923445(-) (sxy/tfoX) [Escherichia coli strain 1916D18]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=400124 GJD92_RS14735 WP_000839153.1 2922816..2923445(-) (sxy/tfoX) [Escherichia coli strain 1916D18]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment