Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   GJS30_RS14160 Genome accession   NZ_CP045993
Coordinates   2910392..2911144 (-) Length   250 a.a.
NCBI ID   WP_022552879.1    Uniprot ID   -
Organism   Bacillus velezensis strain LABIM22     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2905392..2916144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJS30_RS14135 (GJS30_14080) mreC 2905828..2906691 (-) 864 WP_016938781.1 rod shape-determining protein MreC -
  GJS30_RS14140 (GJS30_14085) mreB 2906722..2907735 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  GJS30_RS14145 (GJS30_14090) radC 2907827..2908522 (-) 696 WP_007408165.1 DNA repair protein RadC -
  GJS30_RS14150 (GJS30_14095) - 2908554..2909123 (-) 570 WP_012118105.1 nucleoside triphosphate pyrophosphatase -
  GJS30_RS14155 (GJS30_14100) - 2909264..2910265 (-) 1002 WP_022552880.1 SPOR domain-containing protein -
  GJS30_RS14160 (GJS30_14105) comC 2910392..2911144 (-) 753 WP_022552879.1 A24 family peptidase Machinery gene
  GJS30_RS14165 (GJS30_14110) - 2911285..2912577 (-) 1293 WP_017418285.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  GJS30_RS14170 (GJS30_14115) - 2912636..2915278 (-) 2643 WP_012118109.1 valine--tRNA ligase -
  GJS30_RS14175 (GJS30_14120) - 2915731..2915922 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27249.96 Da        Isoelectric Point: 9.4293

>NTDB_id=400076 GJS30_RS14160 WP_022552879.1 2910392..2911144(-) (comC) [Bacillus velezensis strain LABIM22]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGTVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=400076 GJS30_RS14160 WP_022552879.1 2910392..2911144(-) (comC) [Bacillus velezensis strain LABIM22]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCTGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCA
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCGAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGTGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAACCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58

Multiple sequence alignment