Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   GJS30_RS08380 Genome accession   NZ_CP045993
Coordinates   1620320..1620919 (+) Length   199 a.a.
NCBI ID   WP_160216833.1    Uniprot ID   -
Organism   Bacillus velezensis strain LABIM22     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1615320..1625919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJS30_RS08350 (GJS30_08305) - 1615534..1615989 (+) 456 WP_014417614.1 flavodoxin -
  GJS30_RS08355 (GJS30_08310) dapD 1616071..1616781 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  GJS30_RS08360 (GJS30_08315) - 1616852..1617976 (+) 1125 WP_017417680.1 N-acetyldiaminopimelate deacetylase -
  GJS30_RS08365 (GJS30_08320) - 1618037..1618282 (+) 246 WP_003154596.1 YkuS family protein -
  GJS30_RS08370 (GJS30_08325) - 1618316..1619122 (-) 807 WP_025649509.1 mechanosensitive ion channel family protein -
  GJS30_RS08375 (GJS30_08330) - 1619410..1619868 (+) 459 WP_017417682.1 TlpA disulfide reductase family protein -
  GJS30_RS08380 (GJS30_08335) rok 1620320..1620919 (+) 600 WP_160216833.1 transcriptional regulator Rok Regulator
  GJS30_RS08385 (GJS30_08340) - 1620940..1621932 (-) 993 WP_179156016.1 sporulation protein -
  GJS30_RS08390 (GJS30_08345) - 1622078..1622680 (+) 603 WP_025649507.1 molybdenum cofactor guanylyltransferase -
  GJS30_RS08395 (GJS30_08350) - 1622732..1623751 (+) 1020 WP_095059974.1 molybdopterin-synthase adenylyltransferase MoeB -
  GJS30_RS08400 (GJS30_08355) glp 1623769..1625061 (+) 1293 WP_179156017.1 gephyrin-like molybdotransferase Glp -
  GJS30_RS08405 (GJS30_08360) mobB 1625022..1625543 (+) 522 WP_029973679.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22653.70 Da        Isoelectric Point: 9.6909

>NTDB_id=400051 GJS30_RS08380 WP_160216833.1 1620320..1620919(+) (rok) [Bacillus velezensis strain LABIM22]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTF
MQSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 600 bp        

>NTDB_id=400051 GJS30_RS08380 WP_160216833.1 1620320..1620919(+) (rok) [Bacillus velezensis strain LABIM22]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCCGCAGATGCAGCAGTCTATTACGTCTCTTCCCGCCGGTATTCCGGACGGTTCTACAAG
AAGAAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACGTTGAAACGCCACA
ATGCAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTT
ATGCAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCA
GGAAACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

85.641

97.99

0.839

Multiple sequence alignment