Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   GJS30_RS08280 Genome accession   NZ_CP045993
Coordinates   1604455..1604919 (-) Length   154 a.a.
NCBI ID   WP_014417605.1    Uniprot ID   I2C4C5
Organism   Bacillus velezensis strain LABIM22     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1599455..1609919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJS30_RS08260 (GJS30_08220) - 1599936..1601756 (+) 1821 WP_021493759.1 PAS domain-containing protein -
  GJS30_RS08265 (GJS30_08225) - 1601737..1602950 (-) 1214 Protein_1586 aminotransferase A -
  GJS30_RS08270 - 1603151..1603312 (-) 162 WP_007409608.1 hypothetical protein -
  GJS30_RS08275 (GJS30_08230) cheV 1603501..1604412 (+) 912 WP_014417604.1 chemotaxis protein CheV -
  GJS30_RS08280 (GJS30_08235) kre 1604455..1604919 (-) 465 WP_014417605.1 YkyB family protein Regulator
  GJS30_RS08285 (GJS30_08240) - 1605042..1606334 (-) 1293 WP_014417606.1 MFS transporter -
  GJS30_RS08290 (GJS30_08245) - 1606410..1606904 (-) 495 WP_089072484.1 L,D-transpeptidase family protein -
  GJS30_RS08295 (GJS30_08250) - 1606979..1607842 (-) 864 WP_022553417.1 metallophosphoesterase -
  GJS30_RS08300 (GJS30_08255) fadH 1607986..1608750 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  GJS30_RS08305 (GJS30_08260) - 1608864..1609412 (+) 549 WP_021493756.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17812.60 Da        Isoelectric Point: 10.5497

>NTDB_id=400050 GJS30_RS08280 WP_014417605.1 1604455..1604919(-) (kre) [Bacillus velezensis strain LABIM22]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFRHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=400050 GJS30_RS08280 WP_014417605.1 1604455..1604919(-) (kre) [Bacillus velezensis strain LABIM22]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCGGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C4C5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment