Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   GJS30_RS06525 Genome accession   NZ_CP045993
Coordinates   1281205..1281783 (+) Length   192 a.a.
NCBI ID   WP_179155975.1    Uniprot ID   -
Organism   Bacillus velezensis strain LABIM22     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1276205..1286783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJS30_RS19940 - 1276705..1277220 (-) 516 WP_369719112.1 methyl-accepting chemotaxis protein -
  GJS30_RS19945 - 1277464..1278123 (-) 660 Protein_1232 protoglobin domain-containing protein -
  GJS30_RS06510 (GJS30_06495) - 1278120..1279643 (-) 1524 WP_014417355.1 FAD-dependent oxidoreductase -
  GJS30_RS06515 (GJS30_06500) - 1279768..1280625 (+) 858 WP_007610477.1 SDR family oxidoreductase -
  GJS30_RS06520 (GJS30_06505) - 1280656..1280889 (-) 234 WP_007610478.1 IDEAL domain-containing protein -
  GJS30_RS06525 (GJS30_06510) comK 1281205..1281783 (+) 579 WP_179155975.1 competence protein ComK Regulator
  GJS30_RS06530 (GJS30_06515) - 1281929..1282297 (+) 369 WP_022553588.1 iron chaperone -
  GJS30_RS06535 (GJS30_06520) - 1282324..1282695 (+) 372 WP_110124619.1 iron chaperone -
  GJS30_RS06540 (GJS30_06525) - 1282818..1283327 (+) 510 WP_110124620.1 MepB family protein -
  GJS30_RS06545 (GJS30_06530) - 1283556..1284266 (-) 711 WP_029973179.1 YrpD family protein -
  GJS30_RS06550 (GJS30_06535) - 1284462..1284731 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  GJS30_RS06555 (GJS30_06540) - 1284764..1285081 (-) 318 WP_003155166.1 YbjQ family protein -
  GJS30_RS06560 (GJS30_06545) - 1285123..1286592 (-) 1470 WP_110124621.1 sodium:solute symporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22291.60 Da        Isoelectric Point: 8.1344

>NTDB_id=400039 GJS30_RS06525 WP_179155975.1 1281205..1281783(+) (comK) [Bacillus velezensis strain LABIM22]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
LIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=400039 GJS30_RS06525 WP_179155975.1 1281205..1281783(+) (comK) [Bacillus velezensis strain LABIM22]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCGCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGATACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGC
CTTATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAGGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823

Multiple sequence alignment