Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   GJS30_RS05430 Genome accession   NZ_CP045993
Coordinates   1081521..1082312 (+) Length   263 a.a.
NCBI ID   WP_061861992.1    Uniprot ID   -
Organism   Bacillus velezensis strain LABIM22     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 1076521..1087312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJS30_RS05405 (GJS30_05385) - 1078515..1079399 (+) 885 WP_021493842.1 PhzF family phenazine biosynthesis isomerase -
  GJS30_RS05410 (GJS30_05390) - 1079476..1080060 (+) 585 WP_007408549.1 nitroreductase -
  GJS30_RS05415 (GJS30_05395) - 1080100..1080291 (-) 192 WP_003155508.1 YfhD family protein -
  GJS30_RS05420 (GJS30_05400) - 1080362..1080472 (-) 111 WP_003155504.1 YfhE family protein -
  GJS30_RS05425 (GJS30_05405) - 1080530..1081429 (-) 900 WP_053285208.1 TIGR01777 family oxidoreductase -
  GJS30_RS05430 (GJS30_05410) recX 1081521..1082312 (+) 792 WP_061861992.1 recombination regulator RecX Regulator
  GJS30_RS05435 (GJS30_05415) - 1082319..1082633 (+) 315 WP_007408553.1 YfhH family protein -
  GJS30_RS05440 (GJS30_05420) - 1082778..1083971 (+) 1194 WP_179156193.1 MFS transporter -
  GJS30_RS05445 (GJS30_05425) - 1084011..1084400 (-) 390 WP_061861286.1 DUF2606 family protein -
  GJS30_RS05450 (GJS30_05430) - 1084363..1085274 (-) 912 WP_160216786.1 serine protease -
  GJS30_RS05455 (GJS30_05435) - 1085419..1085571 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  GJS30_RS05460 (GJS30_05440) - 1085695..1085964 (+) 270 WP_003155492.1 YfhJ family protein -
  GJS30_RS05465 (GJS30_05445) - 1086096..1086623 (+) 528 WP_022552788.1 SH3 domain-containing protein -
  GJS30_RS05470 (GJS30_05450) - 1086709..1087044 (+) 336 WP_053285204.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30920.14 Da        Isoelectric Point: 6.5190

>NTDB_id=400034 GJS30_RS05430 WP_061861992.1 1081521..1082312(+) (recX) [Bacillus velezensis strain LABIM22]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQHGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDGDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=400034 GJS30_RS05430 WP_061861992.1 1081521..1082312(+) (recX) [Bacillus velezensis strain LABIM22]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAGAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGCACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCGGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGGCGATACCATCAAGGAGACGCTCAGTGCGTTTACATTTGATGAGCAGATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTCAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAACAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGCTATGAAAGCGGAATGAAG
GTCAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

78.707

100

0.787

Multiple sequence alignment