Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   GJS30_RS03160 Genome accession   NZ_CP045993
Coordinates   635413..636366 (+) Length   317 a.a.
NCBI ID   WP_015239156.1    Uniprot ID   A0AAP3YGS2
Organism   Bacillus velezensis strain LABIM22     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 630413..641366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJS30_RS03135 (GJS30_03130) - 630458..631885 (+) 1428 WP_089072406.1 HAMP domain-containing sensor histidine kinase -
  GJS30_RS03140 (GJS30_03135) rapC 632044..633192 (+) 1149 WP_014304340.1 Rap family tetratricopeptide repeat protein Regulator
  GJS30_RS03145 (GJS30_03140) phrC 633176..633295 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  GJS30_RS03150 (GJS30_03145) - 633445..633555 (-) 111 WP_369878517.1 YjcZ family sporulation protein -
  GJS30_RS03155 (GJS30_03150) - 633635..634999 (-) 1365 WP_014416903.1 aspartate kinase -
  GJS30_RS03160 (GJS30_03155) ceuB 635413..636366 (+) 954 WP_015239156.1 ABC transporter permease Machinery gene
  GJS30_RS03165 (GJS30_03160) - 636356..637303 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  GJS30_RS03170 (GJS30_03165) - 637297..638055 (+) 759 WP_022552588.1 ABC transporter ATP-binding protein -
  GJS30_RS03175 (GJS30_03170) - 638077..639021 (+) 945 WP_021495116.1 siderophore ABC transporter substrate-binding protein -
  GJS30_RS03180 (GJS30_03175) - 639063..640487 (-) 1425 WP_179155884.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34945.24 Da        Isoelectric Point: 9.6741

>NTDB_id=400032 GJS30_RS03160 WP_015239156.1 635413..636366(+) (ceuB) [Bacillus velezensis strain LABIM22]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFVFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=400032 GJS30_RS03160 WP_015239156.1 635413..636366(+) (ceuB) [Bacillus velezensis strain LABIM22]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTATTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
TATCGCTTTCGTTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGATCTGATC
CAAAACCTGTCATCTTGGCTGCAGGGAGATTTTTCACTGGTCGTCAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTTAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCTTGCCTCACAC
CGCTCTGCTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.797

99.685

0.536

Multiple sequence alignment