Detailed information
Bioinformatically predicted
Overview
| Name | abrB | Type | Regulator |
| Locus tag | GJS30_RS01380 | Genome accession | NZ_CP045993 |
| Coordinates | 275117..275407 (-) | Length | 96 a.a. |
| NCBI ID | WP_169510469.1 | Uniprot ID | - |
| Organism | Bacillus velezensis strain LABIM22 | ||
| Function | repression of comK; repression of rok (predicted from homology) Competence regulation |
||
Genomic Context
Location: 270117..280407
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GJS30_RS01340 (GJS30_01335) | darA | 270134..270463 (+) | 330 | WP_004264734.1 | cyclic di-AMP receptor DarA | - |
| GJS30_RS01345 (GJS30_01340) | - | 270476..270916 (+) | 441 | WP_004264730.1 | YaaR family protein | - |
| GJS30_RS01350 (GJS30_01345) | holB | 270928..271917 (+) | 990 | WP_007409919.1 | DNA polymerase III subunit delta' | - |
| GJS30_RS01355 (GJS30_01350) | ricT | 271920..272747 (+) | 828 | WP_004264723.1 | competence/sporulation regulator complex protein RicT | - |
| GJS30_RS01360 (GJS30_01355) | yabA | 272762..273121 (+) | 360 | WP_004264720.1 | replication initiation-control protein YabA | - |
| GJS30_RS01365 (GJS30_01360) | - | 273182..273925 (+) | 744 | WP_004264717.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| GJS30_RS01370 (GJS30_01365) | - | 273912..274211 (+) | 300 | WP_007409921.1 | GIY-YIG nuclease family protein | - |
| GJS30_RS01375 (GJS30_01370) | rsmI | 274186..275067 (+) | 882 | WP_017419497.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| GJS30_RS01380 (GJS30_01375) | abrB | 275117..275407 (-) | 291 | WP_169510469.1 | transition state genes transcriptional regulator AbrB | Regulator |
| GJS30_RS01385 (GJS30_01380) | metG | 275890..277881 (+) | 1992 | WP_022552471.1 | methionine--tRNA ligase | - |
| GJS30_RS01390 (GJS30_01385) | - | 277958..278725 (+) | 768 | WP_121984736.1 | TatD family hydrolase | - |
| GJS30_RS01395 (GJS30_01390) | - | 278860..280185 (+) | 1326 | WP_023356663.1 | G5 and 3D domain-containing protein | - |
Sequence
Protein
Download Length: 96 a.a. Molecular weight: 10753.57 Da Isoelectric Point: 6.3482
>NTDB_id=400024 GJS30_RS01380 WP_169510469.1 275117..275407(-) (abrB) [Bacillus velezensis strain LABIM22]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK
Nucleotide
Download Length: 291 bp
>NTDB_id=400024 GJS30_RS01380 WP_169510469.1 275117..275407(-) (abrB) [Bacillus velezensis strain LABIM22]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| abrB | Bacillus subtilis subsp. subtilis str. 168 |
97.917 |
100 |
0.979 |