Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   HT132_RS19140 Genome accession   NZ_CP054479
Coordinates   3909916..3911037 (-) Length   373 a.a.
NCBI ID   WP_014416837.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain R8-25     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3904916..3916037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT132_RS19125 (HT132_19125) - 3905789..3907468 (-) 1680 WP_072177572.1 alpha-glucosidase -
  HT132_RS19130 (HT132_19130) - 3907781..3909019 (+) 1239 WP_022552542.1 MFS transporter -
  HT132_RS19135 (HT132_19135) - 3909023..3909799 (-) 777 WP_017419351.1 glucose 1-dehydrogenase -
  HT132_RS19140 (HT132_19140) rapF 3909916..3911037 (-) 1122 WP_014416837.1 tetratricopeptide repeat protein Regulator
  HT132_RS19145 (HT132_19145) - 3911147..3911650 (+) 504 WP_021495286.1 M15 family metallopeptidase -
  HT132_RS19150 (HT132_19150) - 3911647..3913005 (-) 1359 WP_174532728.1 YcdB/YcdC domain-containing protein -
  HT132_RS19155 (HT132_19155) - 3913206..3914612 (-) 1407 WP_017419347.1 YcdB/YcdC domain-containing protein -
  HT132_RS19160 (HT132_19160) - 3914735..3915730 (+) 996 WP_160216709.1 DUF5105 domain-containing protein -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 44299.50 Da        Isoelectric Point: 5.0806

>NTDB_id=399951 HT132_RS19140 WP_014416837.1 3909916..3911037(-) (rapF) [Bacillus amyloliquefaciens strain R8-25]
MKSKIPSEEVAVKMNEWYKLIRAFEADKAEALKREIQFELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLECALEHAERLDDQYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAAEWEDEIYLTKFRLIKELYQGEGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHQRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=399951 HT132_RS19140 WP_014416837.1 3909916..3911037(-) (rapF) [Bacillus amyloliquefaciens strain R8-25]
ATGAAATCCAAGATTCCATCTGAAGAAGTGGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TAAAGCTGAAGCGCTGAAGCGGGAGATTCAATTTGAACTCGAAGATATGGAAGAGAACCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTCGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGGGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAACTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTTTGTATAAAATTTCTGAGGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCAGGACAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCGCTGGAATACCTCGAATGCGCCTTGGAGCACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTCTGGGTGACTTTTGCAAGGCGGCG
GAGGATTTTGAACGGGCGGCCGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAGGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGCGCGGGGCATGAGAAGCGCGGCGGAATGGGAAG
ATGAGATCTATCTGACGAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATTCTGGAATCAAAAGAGCTGTTGGCTGACACAGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATCAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-65)

Tetratricopeptide repeat (TPR_12)

(187-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

42.857

99.464

0.426
  rapC Bacillus subtilis subsp. subtilis str. 168

40.323

99.732

0.402