Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1976   Type   Machinery gene
Locus tag   GJD98_RS09950 Genome accession   NZ_CP045974
Coordinates   2209974..2210531 (-) Length   185 a.a.
NCBI ID   WP_010947711.1    Uniprot ID   Q5ZU13
Organism   Legionella pneumophila strain AUSMDU00010536 isolate SBT211     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2204974..2215531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJD98_RS09925 (GJD98_09925) - 2205130..2205753 (-) 624 WP_025862380.1 hypothetical protein -
  GJD98_RS09930 (GJD98_09930) - 2205972..2206622 (-) 651 WP_010947707.1 lysoplasmalogenase -
  GJD98_RS09935 (GJD98_09935) - 2206702..2207202 (-) 501 WP_015444348.1 hypothetical protein -
  GJD98_RS09940 (GJD98_09940) - 2207694..2208554 (+) 861 WP_015444347.1 polysaccharide deacetylase family protein -
  GJD98_RS09945 (GJD98_09945) - 2208671..2209864 (-) 1194 WP_010947710.1 murein transglycosylase A -
  GJD98_RS09950 (GJD98_09950) lpp1976 2209974..2210531 (-) 558 WP_010947711.1 hypothetical protein Machinery gene
  GJD98_RS09955 (GJD98_09955) lpp1977 2210528..2211334 (-) 807 WP_010947712.1 PilW family protein Machinery gene
  GJD98_RS09960 (GJD98_09960) lpp1978 2211273..2211587 (-) 315 WP_010947713.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  GJD98_RS09965 (GJD98_09965) hisC 2211747..2212856 (+) 1110 WP_015444344.1 histidinol-phosphate transaminase -
  GJD98_RS09970 (GJD98_09970) - 2212893..2213234 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  GJD98_RS09975 (GJD98_09975) secF 2213407..2214324 (-) 918 WP_010947716.1 protein translocase subunit SecF -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 21533.91 Da        Isoelectric Point: 6.9393

>NTDB_id=399935 GJD98_RS09950 WP_010947711.1 2209974..2210531(-) (lpp1976) [Legionella pneumophila strain AUSMDU00010536 isolate SBT211]
MKKTDSGFILLMTLCITFLMSLLVLASLQQIFLQFKALNSQETFHQNFYQLEHWMMQLARSPLLYAGMDCYLQKDYGANK
IANELVNNKGCVLILNQKKYRYFIEDLNEFSCLVLNKDGQKYASHHFRFTVLQDEEHGESTVMQLRFIKLGSNLSSCPEG
EIQVKEGVSSWRYLPDYKNFEILTG

Nucleotide


Download         Length: 558 bp        

>NTDB_id=399935 GJD98_RS09950 WP_010947711.1 2209974..2210531(-) (lpp1976) [Legionella pneumophila strain AUSMDU00010536 isolate SBT211]
ATGAAAAAAACCGATTCCGGTTTCATTCTTTTAATGACGCTCTGTATAACTTTCTTGATGAGCTTATTGGTTTTGGCAAG
CCTCCAGCAGATATTCTTGCAATTCAAAGCACTCAATTCACAGGAGACATTTCATCAAAATTTCTATCAGTTGGAACATT
GGATGATGCAACTCGCTCGTTCACCGTTATTGTATGCAGGTATGGATTGTTATCTGCAAAAGGATTATGGAGCTAATAAA
ATAGCAAACGAGTTAGTTAACAATAAAGGATGTGTGCTCATATTAAATCAGAAAAAATACAGATATTTTATTGAGGACCT
GAATGAATTTTCTTGTTTGGTTCTTAATAAGGATGGGCAAAAATATGCTTCTCACCATTTTAGATTCACCGTATTACAAG
ACGAGGAGCATGGCGAATCTACTGTCATGCAATTAAGGTTTATCAAATTGGGTAGCAATTTGTCCTCTTGTCCAGAGGGG
GAAATACAGGTGAAGGAAGGGGTAAGCAGCTGGAGATACTTGCCAGATTATAAAAATTTTGAAATATTAACTGGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5ZU13

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1976 Legionella pneumophila str. Paris

95.676

100

0.957
  lpp1976 Legionella pneumophila strain ERS1305867

95.676

100

0.957

Multiple sequence alignment